View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18320_low_23 (Length: 360)

Name: NF18320_low_23
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18320_low_23
NF18320_low_23
[»] chr7 (13 HSPs)
chr7 (11-343)||(4698254-4698587)
chr7 (11-343)||(4862608-4862941)
chr7 (11-343)||(4784899-4785232)
chr7 (11-343)||(4817328-4817661)
chr7 (11-343)||(4713130-4713463)
chr7 (11-253)||(4854590-4854833)
chr7 (110-345)||(4629728-4629963)
chr7 (110-345)||(4665754-4665989)
chr7 (110-319)||(4652339-4652548)
chr7 (110-345)||(4635676-4635911)
chr7 (110-316)||(4660620-4660826)
chr7 (110-345)||(4642523-4642758)
chr7 (110-319)||(4671459-4671668)
[»] chr4 (1 HSPs)
chr4 (111-345)||(18926801-18927035)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 4698587 - 4698254
Alignment:
11 catcatcatgcaaacaactcaacgccatttggcaataactttt-agacattcagccgttatagaatcctttatgaacgggtccaccatctcctcgatgat 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
4698587 catcatcatgcaaacaactcaacaccatttggcaataactttttagacattcagccgttatagaatcctttatgaacgggtccaccatctcttcgatgat 4698488  T
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4698487 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 4698388  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4698387 agcacaacaccaaaagagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 4698288  T
310 tgacgtgggtcatcgacattcctgttggtcccac 343  Q
    ||||||||||||||||||||||||||||||||||    
4698287 tgacgtgggtcatcgacattcctgttggtcccac 4698254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 4862608 - 4862941
Alignment:
11 catcatcatgcaaacaactcaacgccatttggcaataactttt-agacattcagccgttatagaatcctttatgaacgggtccaccatctcctcgatgat 109  Q
    |||| |||||||||||||| ||  ||||||| ||||||| ||| | ||| |||   ||||||||||| ||||||||||| || |||||||| || || ||    
4862608 catcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacggatctaccatctcttcaattat 4862707  T
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
     |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||    
4862708 gacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttcttttcagaagaacgaaccaatggtggtctcgcacacaacacctcaaga 4862807  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    || ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||   ||||    
4862808 aggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagactacccttcaccacggtgc 4862907  T
310 tgacgtgggtcatcgacattcctgttggtcccac 343  Q
    ||||||| || || ||||||||||||||||||||    
4862908 tgacgtgagtgatagacattcctgttggtcccac 4862941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 4785232 - 4784899
Alignment:
11 catcatcatgcaaacaactcaacgccatttggcaataactttt-agacattcagccgttatagaatcctttatgaacgggtccaccatctcctcgatgat 109  Q
    ||||||||||||||||| | ||| ||||||| ||||||| ||| | ||| |||   ||||||||||| || ||||||||||||||||| || || || |     
4785232 catcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgggtccaccatatcttcaattac 4785133  T
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    || |||||||||||||||| |||| |||||||   | ||||| ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||    
4785132 cataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaacgaaccaacgggggtctcgcacacaacacctcaaga 4785033  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    |||||||||||||| |||||||| || |||||||| ||||||||||| || | ||||||||| ||||| ||||||||||||||||| |||||| ||||||    
4785032 agcacaacaccgaaagagtacacatcagactttagagtcaacctttgtcgcatgtagtattctggatccaaatacccgagactacctttcaccatagtgc 4784933  T
310 tgacgtgggtcatcgacattcctgttggtcccac 343  Q
    |||| |||||||||||||| ||||| ||||||||    
4784932 tgacatgggtcatcgacatccctgtaggtcccac 4784899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 4817661 - 4817328
Alignment:
11 catcatcatgcaaacaactcaacgccatttggcaataactttt-agacattcagccgttatagaatcctttatgaacgggtccaccatctcctcgatgat 109  Q
    ||||||||||||||||| | ||| ||||||| ||||||| ||| | ||| |||   ||||||||||| || ||||||||||||||||| || || || |     
4817661 catcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgggtccaccatatcttcaattac 4817562  T
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    || |||||||||||||||| |||| |||||||   | ||||| ||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||    
4817561 cataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaccgaaccaacgggggtctcgcacacaacacctcaaga 4817462  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    |||||||||||||| |||||||| || |||||||| ||||| ||||| || | ||||||||| ||||| ||||||||||||||||| |||||| ||||||    
4817461 agcacaacaccgaaagagtacacatcagactttagagtcaatctttgtcgcatgtagtattctggatccaaatacccgagactacctttcaccatagtgc 4817362  T
310 tgacgtgggtcatcgacattcctgttggtcccac 343  Q
    |||| |||||||||||||| ||||| ||||||||    
4817361 tgacatgggtcatcgacatccctgtaggtcccac 4817328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 4713463 - 4713130
Alignment:
11 catcatcatgcaaacaactcaacgccatttggcaataactttt-agacattcagccgttatagaatcctttatgaacgggtccaccatctcctcgatgat 109  Q
    ||||| ||||||||||||||||| ||||||  ||||||| ||| | ||| |||   |||||||| |||||||||||||||||||||||||| || |  ||    
4713463 catcaccatgcaaacaactcaacaccatttcacaataacatttcaaacactcacttgttatagagtcctttatgaacgggtccaccatctcttcaactat 4713364  T
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||||||||||||| ||| |||| ||   || |   || |||||| ||| ||||||||| || |||||||||||||||||||||| |||||||||    
4713363 cacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaaga 4713264  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    |||||||| ||||| ||||||||||| ||||| || |||||| | |  || |||||| | || ||||| ||||| || | ||||||||||||| ||||||    
4713263 agcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctatactacccttcaccatagtgc 4713164  T
310 tgacgtgggtcatcgacattcctgttggtcccac 343  Q
    |||| || ||||| || || ||||||||||||||    
4713163 tgacatgagtcattgatatccctgttggtcccac 4713130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 4854833 - 4854590
Alignment:
11 catcatcatgcaaacaactcaacgccatttggcaataactttt-agacattcagccgttatagaatcctttatgaacgggtccaccatctcctcgatgat 109  Q
    ||||| ||||||||||||||||| ||||||| ||||||  ||| | ||| |||   |||||||| ||||||||||| |||||||||||||| || |  ||    
4854833 catcaccatgcaaacaactcaacaccatttgacaataaaatttcaaacactcacttgttatagagtcctttatgaatgggtccaccatctcttcaactat 4854734  T
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||| ||||||||||||||| ||| |||| ||   || |   || |||||||||| |||||  || || |||||||||||||||||||||| | |||||||    
4854733 cactccttcattgtaacattttttgaacaaagcaaccatgttcacttttttcttatccaataaatgatccaaaggtggtctcgcacacaacatctcaaga 4854634  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacct 253  Q
    || ||| ||||||| |||||||| || |||||||| ||||||||    
4854633 agtacatcaccgaaagagtacacatcagactttagagtcaacct 4854590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 110 - 345
Target Start/End: Original strand, 4629728 - 4629963
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    |||||||||||| |  ||| |||| |||||| | |||| ||| ||| | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
4629728 cacaccttcattatggcatttttgaaaccaacaaactagactagctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4629827  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    ||||| ||||| || ||||||||||| || ||||| || | ||||||  | |  |||||||||||||| ||||| || || || ||||||||| | ||||    
4629828 agcaccacaccaaacgagtacacgtcagattttagagttagcctttggagcatatagtattcgggatccaaatatccaaggctccccttcaccatcgtgc 4629927  T
310 tgacgtgggtcatcgacattcctgttggtcccacct 345  Q
    |||| |||||  |||  |||||||| ||||||||||    
4629928 tgacatgggtagtcgttattcctgtaggtcccacct 4629963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 110 - 345
Target Start/End: Original strand, 4665754 - 4665989
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||||| ||||||| |||  |||||| | |||| ||| ||  | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
4665754 cacaccttcatcgtaacattttttaaaccaacaaactagactagcagtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4665853  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    ||||| |||||||| |||||||| || || ||||| || | ||||||  | |  || ||||||||||| ||||| ||||| || ||||||||| | ||||    
4665854 agcaccacaccgaacgagtacacatcagattttagagttagcctttggagcatataatattcgggatccaaatatccgaggctccccttcaccatcgtgc 4665953  T
310 tgacgtgggtcatcgacattcctgttggtcccacct 345  Q
    |||| |||||  | || || ||||| ||||||||||    
4665954 tgacatgggtagttgatatccctgtcggtcccacct 4665989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 319
Target Start/End: Original strand, 4652339 - 4652548
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||||| ||| ||| |||  |||||| | |||| ||| ||| | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
4652339 cacaccttcatcgtagcattttttaaaccaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4652438  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    ||||| |||||||| |||||||| || || ||||| || | ||||||  | |  || ||||| ||||| |||||||| || |||||||||||| | ||||    
4652439 agcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttcaccatcgtgc 4652538  T
310 tgacgtgggt 319  Q
    | || |||||    
4652539 taacatgggt 4652548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 110 - 345
Target Start/End: Original strand, 4635676 - 4635911
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||| | ||| ||||||| ||||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| |||||||||    
4635676 cacaccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaaga 4635775  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    ||||| |||||||| ||||||||||| || || || || | ||||||    |  ||||| || |||||||||||||| |  || ||||| ||  | ||||    
4635776 agcaccacaccgaatgagtacacgtctgatttaagagtaagcctttggaacatatagtactcaggatctaaataccccaagcttcccttaacaattgtgc 4635875  T
310 tgacgtgggtcatcgacattcctgttggtcccacct 345  Q
    ||||||||||  |||| || ||||| ||||||||||    
4635876 tgacgtgggtagtcgatatacctgtcggtcccacct 4635911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 316
Target Start/End: Original strand, 4660620 - 4660826
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    |||||||||||  || |||||||  |||||| | |||| ||| | | | ||||| ||||||   |||||||| ||||| || |||||||| |||||||||    
4660620 cacaccttcatcatagcatcttttaaaccaacaaactagactagttgtattcttatccaaatcgcgaaccaatggtggcctagcacacaacacctcaaga 4660719  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    ||||| |||||||| |||||||| || || ||||| || ||||||||  | |  ||||||| |||||| |||||||| || || ||||||||| | ||||    
4660720 agcaccacaccgaacgagtacacttcagattttagagttaacctttggagcatatagtattggggatccaaatacccaaggctccccttcaccattgtgc 4660819  T
310 tgacgtg 316  Q
    |||||||    
4660820 tgacgtg 4660826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 345
Target Start/End: Original strand, 4642523 - 4642758
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||| | ||| ||||||| ||||||| | |||| ||| ||  | ||||| ||||||  ||||||||||||||| || |||||||| || ||||||    
4642523 cacaccttcttcgtagcatcttttgaaccaacaaactagactagcagtattcttatccaaattacgaaccaaaggtggcctagcacacaacacttcaaga 4642622  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    || || |||||||| |||||||| || || ||||| || | ||||||    |  ||||| || |||||||||||||| || || || |||||| | ||||    
4642623 agtaccacaccgaacgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaaatacccaaggcttcctttcaccattgtgc 4642722  T
310 tgacgtgggtcatcgacattcctgttggtcccacct 345  Q
    ||| ||||||  |||| || ||||| ||||||||||    
4642723 tgatgtgggtagtcgatatccctgtaggtcccacct 4642758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 319
Target Start/End: Original strand, 4671459 - 4671668
Alignment:
110 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 209  Q
    ||||||||||| ||| |||||||  |||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| || ||||||    
4671459 cacaccttcatcgtagcatcttttaaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacttcaaga 4671558  T
210 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgc 309  Q
    || || |||||||| |||||||| || || ||||| || | ||||||    |  ||||| || |||||||||||||| || || || |||||| | ||||    
4671559 agtaccacaccgaatgagtacacatctgattttagagttagcctttggaacatatagtactcaggatctaaatacccaaggcttcctttcaccattgtgc 4671658  T
310 tgacgtgggt 319  Q
    ||||||||||    
4671659 tgacgtgggt 4671668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 345
Target Start/End: Complemental strand, 18927035 - 18926801
Alignment:
111 acaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaa 210  Q
    |||||||||| |||||||||||| |||||| | |||| ||| ||  | ||||| || |||   |||||||||||||| || |||||||||||||||||||    
18927035 acaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaaaggtggccttgcacacaatacctcaagaa 18926936  T
211 gcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgct 310  Q
    |||| |||||||| ||||||||||| || |||||||| | ||||||  | |  ||||| || |||||||||||||| ||||| ||||||||| | |||||    
18926935 gcaccacaccgaatgagtacacgtcagattttagggtaagcctttggagcatatagtactcaggatctaaatacccaagactccccttcaccattgtgct 18926836  T
311 gacgtgggtcatcgacattcctgttggtcccacct 345  Q
    ||| |||||  | || || || |||||||||||||    
18926835 gacatgggtagttgatatccccgttggtcccacct 18926801  T

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