View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_25 (Length: 353)
Name: NF18320_low_25
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 43828566 - 43828904
Alignment:
| Q |
1 |
agaaccggagagatgtctggttcgatctagataacagaccgtatatgcaagaaaactggtcgaactgatgaacccctataacccgaagcgaaccgaccgg |
100 |
Q |
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| T |
43828566 |
agaatcggagggatgtctggttcgatctagataacagaccgtatatgcaagaaaattggtcgaactgatgaacccctataacccgaaacgaaccgaccgg |
43828665 |
T |
|
| Q |
101 |
aataaatattaaatgaatgcttcnnnnnnnttccagaaatatggttagacggattcaaaccagttgacatggatgctgctcataatcctctaaccactcg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43828666 |
aataaatattaaatgaatgcttcaaaaaaattccagaaatatggttagacggattcaaaccagttgacatggatgctactcataatcctctaaccactcg |
43828765 |
T |
|
| Q |
201 |
gccaactaaacagacatgcttnnnnnnngtttcatctgcgtaattttaatcaatcgaaataatcaagcctaaccaaaaactaaattaactactaattaat |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43828766 |
gccaactaaacagacatgcttaaaaaaagtttcatctgcgtaattttaatcaatcgaaataatcaagcctaaccaaaaactaaattaactactaattaat |
43828865 |
T |
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| Q |
301 |
cannnnnnnccctctttgaaatcctttgtatataaatat |
339 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
43828866 |
catttttttccctctttgaaatcctttgtatataaatat |
43828904 |
T |
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