View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_28 (Length: 303)
Name: NF18320_low_28
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 36041285 - 36041559
Alignment:
| Q |
10 |
catcatcaagatttttaagtgagttttagagagaaatgtgacacacccaagagacgtttaataataatgttgattatataaatagtttcttgccgtaaat |
109 |
Q |
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| T |
36041285 |
catcatcaagatttttaagtgagttttagagagaaatgtgacacacccaagagacgtttaataataatgttgattatataaatggtttcttgccgtaagt |
36041384 |
T |
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| Q |
110 |
gctaaaaacaatttaattaaaattaacaaagcatgcagcgttttacttattataaagtgatcaaataacgatttgtcagcaacatgcaagttaaggagac |
209 |
Q |
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| T |
36041385 |
gttaaaaacaatttaattaaaattaacaaagcatgcagcgttttac---ttataaagtgatcaaataacgatttgtcagcaacatgcaagttaaggagac |
36041481 |
T |
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| Q |
210 |
aaaatatggctgaaattctaaaaatcatttatgctttgattatcttgcacttgcttttcctaactatggtcgtaactg |
287 |
Q |
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| T |
36041482 |
aaaatatggctgaaattctaaaaatcatttatgctttgattatcttgcacttgcttttcctaactatggtcgtaactg |
36041559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 35933171 - 35933116
Alignment:
| Q |
191 |
acatgcaagttaaggagacaaaatatggctgaaattctaaaaatcatttatgcttt |
246 |
Q |
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| T |
35933171 |
acatgcaaattaaagagacaaaatatggctgaaattcaaaaaattgtttatgcttt |
35933116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 9638257 - 9638115
Alignment:
| Q |
110 |
gctaaaaacaatttaattaaaattaacaaagcatgcagcgttttacttattataaagtgatcaaataacgatttgtcagcaacatgcaagttaaggagac |
209 |
Q |
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| T |
9638257 |
gctaaaagaaatttaattaaaattaaaaaagcatgaggtgttttacatat---aaaatgatcaaatatttgtttgtttgttacatgcaatttaaggacac |
9638161 |
T |
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| Q |
210 |
aaaatatggctgaaattctaaaaatcatttatgctttgattatctt |
255 |
Q |
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| T |
9638160 |
ataatatggctgaaattctaaaaattctttatgttttcatcatctt |
9638115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 41530856 - 41530760
Alignment:
| Q |
160 |
tataaagtgatcaaataacgatttgtcagcaacatgcaagttaaggagacaaaatatggctgaaattctaaaaatcatttatgctttgattatcttg |
256 |
Q |
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| T |
41530856 |
tataaagtgataaaataactatttgtttgtcacatacaaactaaagagataaaatatggcaggaaatctaaaaattgtttatgctttgatgatcttg |
41530760 |
T |
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