View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18320_low_29 (Length: 272)

Name: NF18320_low_29
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18320_low_29
NF18320_low_29
[»] chr8 (2 HSPs)
chr8 (147-263)||(24539317-24539433)
chr8 (172-229)||(26035162-26035219)
[»] chr2 (2 HSPs)
chr2 (1-156)||(21339572-21339725)
chr2 (50-157)||(21889561-21889668)
[»] chr6 (3 HSPs)
chr6 (1-157)||(14734148-14734304)
chr6 (28-69)||(31131170-31131211)
chr6 (1-73)||(15594765-15594837)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-119)||(21376-21494)
[»] chr4 (2 HSPs)
chr4 (1-119)||(14818217-14818335)
chr4 (29-93)||(14284086-14284150)
[»] chr5 (1 HSPs)
chr5 (1-69)||(19051352-19051420)
[»] chr1 (1 HSPs)
chr1 (25-69)||(22219206-22219250)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 24539433 - 24539317
Alignment:
Q  147 tggccggtgaagtaactatgtttgatttaggattttgatcattgcaatagttgaaatttgctaaatttataaggttgagaaagtgatgatctttacatgc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24539433 tggccggtgaagtaactatgtttgatttaggattttgatcattgcaatagttgaaatttgctaaatttataaggttgagaaagtgatgatctttacatgc 24539334  T
Q  247 ttactgatattcttgga 263  Q
    ||||||||||| |||||    
T  24539333 ttactgatattgttgga 24539317  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 26035162 - 26035219
Alignment:
Q  172 tttaggattttgatcattgcaatagttgaaatttgctaaatttataaggttgagaaag 229  Q
    |||| |||||||||| |||||| |||||||||||||||||||  ||||||||||||||    
T  26035162 tttatgattttgatctttgcaagagttgaaatttgctaaattattaaggttgagaaag 26035219  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 21339572 - 21339725
Alignment:
Q  1 ctgatcaactcaatttagcacacaatagttagaatgaatgtctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagt 100  Q
    ||||||||||||||||||||||| | |||||||| | ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||  |||  |||||    
T  21339572 ctgatcaactcaatttagcacacgacagttagaacggatgcctgagagctgaatagaacctaggaggaacaaattatgtgatggagat--actcagaagt 21339669  T
Q  101 atgagctcggagcaagtaacaataagaatctaattgtgccaaaaggtggccggtga 156  Q
    |||| |||||||||||| ||| |||| ||| | |    ||||||||||||||||||    
T  21339670 atgaactcggagcaagtgacagtaaggatccactcactccaaaaggtggccggtga 21339725  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 21889561 - 21889668
Alignment:
Q  50 tgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagtatgagctcggagcaagtaacaataagaatctaattgtgccaaaaggtgg 149  Q
    ||||||||||| | ||||||||||||| ||| |||| ||||||| | | ||| |||||||||||||||||   ||||||| |||| |||||| |||||||    
T  21889561 tgaataggacccaagaggaacgaattaagtgttggagatgaactagaaggtaggagctcggagcaagtaatggtaagaatttaatcgtgccagaaggtgg 21889660  T
Q  150 ccggtgaa 157  Q
    ||| ||||    
T  21889661 ccgatgaa 21889668  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 14734148 - 14734304
Alignment:
Q  1 ctgatcaactcaatttagcacacaatagttagaatgaatgtctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagt 100  Q
    |||||||||||||| || |||||   ||||| |||  ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||||    
T  14734148 ctgatcaactcaatctatcacacgggagttataattgatgtctgagagctgaataggacctaggaggaacgaagcgtgtgatggagatgaactaggaagt 14734247  T
Q  101 atgagctcggagcaagtaacaataagaatctaattgtgccaaaaggtggccggtgaa 157  Q
    | || |||| ||  | ||| | |||||||||| |  | |||||||||||||||||||    
T  14734248 aagaactcgtagtgactaatagtaagaatctactcattccaaaaggtggccggtgaa 14734304  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 31131170 - 31131211
Alignment:
Q  28 gttagaatgaatgtctgagagctgaataggacctaggaggaa 69  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  31131170 gttaaaatgaatgtctgagagctgaataggacctaggaggaa 31131211  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15594765 - 15594837
Alignment:
Q  1 ctgatcaactcaatttagcacacaatagttagaatgaatgtctgagagctgaataggacctaggaggaacgaa 73  Q
    |||||||||||||| ||| | |  | ||||||||   |||||||||||||||||| |||||||||||||||||    
T  15594765 ctgatcaactcaatctagtatatgacagttagaaaagatgtctgagagctgaatatgacctaggaggaacgaa 15594837  T

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Target: scaffold0005 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21494 - 21376
Alignment:
Q  1 ctgatcaactcaatttagcacacaatagttagaatgaatgtctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagt 100  Q
    |||||||||||||| ||| |||  | | ||||||  |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| || |||    
T  21494 ctgatcaactcaatctagtacatgacatttagaacaaatgtctgagagctgaatagaacctaggaggaacgaagtatgtgatggagatgaactagggagt 21395  T
Q  101 atgagctcggagcaagtaa 119  Q
    | |  ||| ||||||||||    
T  21394 aaggactcagagcaagtaa 21376  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 14818217 - 14818335
Alignment:
Q  1 ctgatcaactcaatttagcacacaatagttagaatgaatgtctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaactgggaagt 100  Q
    |||||||||||||| ||| |||  | | ||||||  |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| || |||    
T  14818217 ctgatcaactcaatctagtacatgacatttagaacaaatgtctgagagctgaatagaacctaggaggaacgaagtatgtgatggagatgaactagggagt 14818316  T
Q  101 atgagctcggagcaagtaa 119  Q
    | |  ||| ||||||||||    
T  14818317 aaggactcagagcaagtaa 14818335  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 14284086 - 14284150
Alignment:
Q  29 ttagaatgaatgtctgagagctgaataggacctaggaggaacgaattatgtgatggaaatgaact 93  Q
    |||| ||| ||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  14284086 ttaggatggatgcctgagagctgaatcggacctaggaggaacgaagtatgtgatggagatgaact 14284150  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19051420 - 19051352
Alignment:
Q  1 ctgatcaactcaatttagcacacaatagttagaatgaatgtctgagagctgaataggacctaggaggaa 69  Q
    |||||||||||||| ||| | |  |||||||||| ||||||||||||| |||||| || ||||||||||    
T  19051420 ctgatcaactcaatctagtatatgatagttagaacgaatgtctgagagatgaatatgatctaggaggaa 19051352  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 22219250 - 22219206
Alignment:
Q  25 atagttagaatgaatgtctgagagctgaataggacctaggaggaa 69  Q
    ||||||||||  | ||||||||||||||||||| |||||||||||    
T  22219250 atagttagaacaagtgtctgagagctgaatagggcctaggaggaa 22219206  T

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