View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_30 (Length: 264)
Name: NF18320_low_30
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 9027949 - 9028158
Alignment:
| Q |
37 |
ctagcctcatcacaactcgcttcacgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggtggaatacaaatagaaattatttcactttggc |
136 |
Q |
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| T |
9027949 |
ctagcctcgtaacaactcgcgtcacgcactaaggagctgcctgtcgtgaaagtcagttacggaagtggtggagtacaaatagaagttatttccctttggc |
9028048 |
T |
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| Q |
137 |
ttattgggttatcgtccaacctcgtcacaagttcacaactcgcgtggcgcactttgatttcactatgggttattgtactttgacattttcctcacgtgaa |
236 |
Q |
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| T |
9028049 |
ttattaggttatcgtccaacctcgtcacaagttcacaactcgcgtagcgcactttgatttcactatgggttattgtactttgacattttcctctcgtgaa |
9028148 |
T |
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| Q |
237 |
aggtagtctt |
246 |
Q |
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||| |||||| |
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| T |
9028149 |
aggcagtctt |
9028158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 9018547 - 9018756
Alignment:
| Q |
37 |
ctagcctcatcacaactcgcttcacgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggtggaatacaaatagaaattatttcactttggc |
136 |
Q |
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||||||| ||||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||| |
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| T |
9018547 |
ctagccttgtcacaactcgcatcgcgcactaaggagctgcctgtcgtgaaagtcaactacggaagtggtggagtacaaatagaaattatttccctttggc |
9018646 |
T |
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| Q |
137 |
ttattgggttatcgtccaacctcgtcacaagttcacaactcgcgtggcgcactttgatttcactatgggttattgtactttgacattttcctcacgtgaa |
236 |
Q |
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| T |
9018647 |
ttattgggtcatcgtccaacctcgtcacaagttcacaactcgcgtggcgcactttgattttactatgggttattgtactttgacattttcctctcgtgaa |
9018746 |
T |
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| Q |
237 |
aggtagtctt |
246 |
Q |
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| T |
9018747 |
aggcagtctt |
9018756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 8993267 - 8993470
Alignment:
| Q |
37 |
ctagcctcatcacaactcgc-ttcacgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggtggaatacaaatagaaattatttcactttgg |
135 |
Q |
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||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| || ||| |
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| T |
8993267 |
ctagccttgtcacaactcacgttcccgcactaaggagctgcctgtcgtgaaagtcagatacggaagtggtggagtacaaatagaaattatttccctctgg |
8993366 |
T |
|
| Q |
136 |
cttattgggttatcgtccaacctcgtcacaagttcacaactcgcgtggcgcactttgatttcactatgggttattgtactttgacattttcctcacgtga |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8993367 |
cttattgggttatcgtccaacctcgtcacaagttcacaactcgtgtggcgcactttgatttcactatgggttattgtactttgacattttcctctcgtga |
8993466 |
T |
|
| Q |
236 |
aagg |
239 |
Q |
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|||| |
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| T |
8993467 |
aagg |
8993470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 9017074 - 9017121
Alignment:
| Q |
192 |
gatttcactatgggttattgtactttgacattttcctcacgtgaaagg |
239 |
Q |
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||||||||| |||| ||||||||||||||||||||||| ||||||||| |
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| T |
9017074 |
gatttcactctgggatattgtactttgacattttcctctcgtgaaagg |
9017121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 9016956 - 9017000
Alignment:
| Q |
61 |
cgcactaaggagctgcctgtcgtgaaagtcagttaaggaagtggt |
105 |
Q |
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| T |
9016956 |
cgcactaaggagctgtgtgtcgcgaaagtcagttacggaagtggt |
9017000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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