View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_33 (Length: 249)
Name: NF18320_low_33
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43109777 - 43109686
Alignment:
| Q |
1 |
ttttaacacatccaattagaattagccaattgtcccacnnnnnnnattatttcaattaatctgaaacctattcaacctgtagctaaacattttga |
95 |
Q |
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| T |
43109777 |
ttttaatacatccaattaaaattacccaactgtcccacttttt---ttatttcaattaacctgaaacctattcaacctgtagctaaacattttga |
43109686 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 43108821 - 43108783
Alignment:
| Q |
178 |
ttcacgtctaaatatttttaattcagcataattacaggg |
216 |
Q |
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| T |
43108821 |
ttcacgtctaagtatttttaattcagcataattacaggg |
43108783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 51489115 - 51489082
Alignment:
| Q |
47 |
ttatttcaattaatctgaaacctattcaacctgt |
80 |
Q |
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| T |
51489115 |
ttatttcaattaatctgaaacctattcaacctgt |
51489082 |
T |
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