View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18320_low_35 (Length: 248)

Name: NF18320_low_35
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18320_low_35
NF18320_low_35
[»] chr7 (1 HSPs)
chr7 (1-235)||(43109767-43110002)
[»] chr3 (4 HSPs)
chr3 (2-44)||(48676829-48676871)
chr3 (2-44)||(32998935-32998977)
chr3 (2-44)||(49283611-49283653)
chr3 (3-44)||(11884901-11884942)
[»] chr5 (3 HSPs)
chr5 (2-42)||(40601418-40601458)
chr5 (8-44)||(19494689-19494725)
chr5 (2-50)||(41696967-41697015)
[»] chr4 (1 HSPs)
chr4 (2-44)||(16499115-16499157)
[»] scaffold0421 (1 HSPs)
scaffold0421 (2-44)||(7287-7329)
[»] chr8 (3 HSPs)
chr8 (2-44)||(13544549-13544591)
chr8 (2-44)||(13679882-13679924)
chr8 (2-42)||(37355048-37355088)
[»] chr6 (1 HSPs)
chr6 (2-44)||(33771448-33771490)
[»] chr2 (2 HSPs)
chr2 (2-44)||(25331917-25331959)
chr2 (4-44)||(17769010-17769050)
[»] scaffold0187 (4 HSPs)
scaffold0187 (1-42)||(11006-11047)
scaffold0187 (1-42)||(21334-21375)
scaffold0187 (2-42)||(10544-10584)
scaffold0187 (2-42)||(20872-20912)
[»] chr1 (1 HSPs)
chr1 (1-34)||(51720739-51720772)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 43109767 - 43110002
Alignment:
Q  1 atgtgttaaaagagaatgttagtgggtgtgaccctaacatttctatttttctt-aaggaattaagctcttgaatattgtggaaaaactcttgtttgaatg 99  Q
    |||| |||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  43109767 atgtattaaaagagaatgttactgggtgagaccctagcatttctatttttttttaaggaattaagctcttgaatattgtggaaaaactcttgtttgaatg 43109866  T
Q  100 agggaactcgttggtcattgtcatgcacctgcgaaaactgtgttaatatctttgtaacccaaaaataaagagtccaaatagagcagtgtgaaatgattaa 199  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43109867 agggaactcgttagtcattgtcatgcaccggcgaaaactgtgttaatatctttgtaacccaaaaataaagagtccaaatagagcagtgtgaaatgattaa 43109966  T
Q  200 ttgcattataaatttatgtatcacgtatgacatggt 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  43109967 ttgcattataaatttatgtatcacgtatgacatggt 43110002  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 48676871 - 48676829
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  48676871 tgtgttaaaagagaatgttagtggatgtgaccctaacatttct 48676829  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 32998977 - 32998935
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||| || ||||||||||||||||| |||||||    
T  32998977 tgtgttaaaagagagtgctagtgggtgtgaccctagcatttct 32998935  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 49283653 - 49283611
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||| ||||||||  ||||||||||||||||||    
T  49283653 tgtgttaaaagagagtgttagtgaatgtgaccctaacatttct 49283611  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 11884942 - 11884901
Alignment:
Q  3 gtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  11884942 gtgttaaaatagagtgttagtgggtgtgaccctaacttttct 11884901  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 40601418 - 40601458
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacattt 42  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  40601418 tgtgttaaaagagagtgttagtgggtgtgaccctaacattt 40601458  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 19494689 - 19494725
Alignment:
Q  8 aaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  19494689 aaaaaagaatgttagtaggtgtgaccctaacatttct 19494725  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 41696967 - 41697015
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttctattttt 50  Q
    ||||||| |||||| |||||||||||||| ||||| ||||||| |||||    
T  41696967 tgtgttagaagagagtgttagtgggtgtggccctagcatttctcttttt 41697015  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 16499157 - 16499115
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  16499157 tgtgttaaaagagagtgttagtgggtgtgaccctagcatttct 16499115  T

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Target: scaffold0421 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 7287 - 7329
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||| ||||||||| |||||||||| |||||||    
T  7287 tgtgttaaaagagagtgttagtggatgtgaccctagcatttct 7329  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 13544591 - 13544549
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||| ||||||||||||||| |||| |||||||    
T  13544591 tgtgttaaaagagagtgttagtgggtgtgagcctagcatttct 13544549  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 13679882 - 13679924
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||| ||||||||||||||| |||| |||||||    
T  13679882 tgtgttaaaagagagtgttagtgggtgtgagcctagcatttct 13679924  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 37355048 - 37355088
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacattt 42  Q
    |||||||||||||| ||||||||| ||||||||||| ||||    
T  37355048 tgtgttaaaagagagtgttagtggatgtgaccctaatattt 37355088  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 33771448 - 33771490
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||||  |||||||||||||||||||| |||||||    
T  33771448 tgtgttaaaagagtgtgttagtgggtgtgaccctagcatttct 33771490  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 25331959 - 25331917
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  25331959 tgtgctaaaagagagtgttagtgggtgtgaccctagcatttct 25331917  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 17769010 - 17769050
Alignment:
Q  4 tgttaaaagagaatgttagtgggtgtgaccctaacatttct 44  Q
    |||||||||||| ||||||||| |||||| |||||||||||    
T  17769010 tgttaaaagagagtgttagtggatgtgactctaacatttct 17769050  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11006 - 11047
Alignment:
Q  1 atgtgttaaaagagaatgttagtgggtgtgaccctaacattt 42  Q
    ||||||||||||||| ||||||||||||||||| || |||||    
T  11006 atgtgttaaaagagagtgttagtgggtgtgaccatagcattt 11047  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21334 - 21375
Alignment:
Q  1 atgtgttaaaagagaatgttagtgggtgtgaccctaacattt 42  Q
    ||||||||||||||| ||||||||||||||||| || |||||    
T  21334 atgtgttaaaagagagtgttagtgggtgtgaccatagcattt 21375  T

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Target: scaffold0187; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 10584 - 10544
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacattt 42  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  10584 tgtgttaaaagagagtgttagtgagtgtgaccctagcattt 10544  T

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Target: scaffold0187; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 20912 - 20872
Alignment:
Q  2 tgtgttaaaagagaatgttagtgggtgtgaccctaacattt 42  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  20912 tgtgttaaaagagagtgttagtgagtgtgaccctagcattt 20872  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51720739 - 51720772
Alignment:
Q  1 atgtgttaaaagagaatgttagtgggtgtgaccc 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  51720739 atgtgttaaaagagagtgttagtgggtgtgaccc 51720772  T

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