View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_5 (Length: 536)
Name: NF18320_low_5
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 7948370 - 7948745
Alignment:
| Q |
15 |
acatcatcatgtcatgtcagagttattctccgcctttcatgccttggttgtgggagagaggttgagatgtgtctttcatggttgaggtgcttttttccct |
114 |
Q |
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| T |
7948370 |
acatcatcatgtcatgtcagagttattctccgcctttcatgccttggttgtgggagagaggttgagatgtgtctttcatggttgaggtgcttttttccct |
7948469 |
T |
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| Q |
115 |
taaattatttgtatgtttatttttggagaaaaatgatgatgcataaagtactgaatttgaaaatctctgaatgcaatcatgttcaatcaaccagtaacta |
214 |
Q |
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| T |
7948470 |
taaattatttgtatgtttatttttggagaaaaatgatgatgcataaagtactaaatttgaaaatctgtgaatacaatcatgttcaatcaagcagtaatta |
7948569 |
T |
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| Q |
215 |
aatagtgattggtatttgtgaaattgagtcccgattaggactcatctaatatgaaatgttaacatcatacatcaaagacgacattaacatg-cgctgtta |
313 |
Q |
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| T |
7948570 |
aatagtgattggtatttgtgaaattgagtctccattatgactcatctaatatgaaatgttaacatcatacatcgaagacgacattaacacgtcgctgtta |
7948669 |
T |
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| Q |
314 |
aaaaatttaaatatgaaatcattgaatgtatcatgatttatatgtgttgatgttgaacaccgaacacgtcttatat |
389 |
Q |
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| T |
7948670 |
aaaaatttaaatatgaaatcattgaatgtatcatgatttatatgtgttgatattgaacattgaacacgtcttatat |
7948745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 433 - 523
Target Start/End: Original strand, 7948801 - 7948891
Alignment:
| Q |
433 |
tatattcattcaaatcgatatagtacatcgaaaataaactcattacctccaagttaattgcataaaacaccaaaatacatagagatgtgat |
523 |
Q |
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| T |
7948801 |
tatattcattcaaatcgatatagtacatcgaaaataaacacattacctccaagttaattgcataaaacaccaaaatacatagagatgtgat |
7948891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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