View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_7 (Length: 518)
Name: NF18320_low_7
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 43205604 - 43206087
Alignment:
| Q |
18 |
gaatatacatgaacacataccgctcacgattcaaaactcgccaaccattttcaagtctggaaacacatgatggggtggaaggatgtgattttaaaaaggt |
117 |
Q |
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| T |
43205604 |
gaatatacatgaacacataccgctcacaattcaaaacttgccaaccattttcaagtctggaaacacatgatggggtggaagggtgtgattttaaaaaggt |
43205703 |
T |
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| Q |
118 |
taaaattagtatttttt---atggtttgtaagggtata--attgttggggtgtggggtaaaatgttcgtaattttgcatcctttaaccaagtggtccggg |
212 |
Q |
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| T |
43205704 |
taaaattagtatttttttttatggtttgtaagggtatataattgttggggtgtggggtaaaatgttcgtaattttgcatcctttaaccaagtggtctggg |
43205803 |
T |
|
| Q |
213 |
ttcaatccctttctcttgtggaagaaaatttgattgaaggccttatgtgtccaacagattatactgatcgatgaaaattattcaattgtgagcagagaac |
312 |
Q |
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| T |
43205804 |
ttcaatccctttctcttgtggaagaaaatttgattgaaggccttatgtgtccaacagattattct----gatgaaaattattcaattgtgagcggagaac |
43205899 |
T |
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| Q |
313 |
tcacattatgcattaaagaggttttcggatcgagattaatcgcctttaaacaacagtgtcagtcaaaagnnnnnnnattattacaatttttaagacaaaa |
412 |
Q |
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| T |
43205900 |
tcacattatgcattaaagaggtttttcgatggagattaatcgcctttaaacaacgatgtcagtcaaaagtttttttattattacaatttttaagacaaaa |
43205999 |
T |
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| Q |
413 |
ataatgatttactaattacatatttcattcaacnnnnnnnctttacatacggcctcatgttatggaaaattttctcttttaaccccctt |
501 |
Q |
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| T |
43206000 |
ataatgatttactaattacatatttcattcaac-ttttttctttacatactgcctcatgttatggaaaatttgctcttttaaccccctt |
43206087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 2092780 - 2092903
Alignment:
| Q |
62 |
ccattttcaagtctggaaacacatgatggggtggaaggatgtgattttaaaaaggttaaaattagtattttttatggttt------gtaagggtataatt |
155 |
Q |
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| T |
2092780 |
ccattttcaagtctggaaacacatgatggggtggaagggtgtgattttgaaaaggttaaaataggtatttttgatggtttgtaggggtaagggtataatt |
2092879 |
T |
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| Q |
156 |
gttggggtgtggggtaaaatgttc |
179 |
Q |
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| T |
2092880 |
gtcggggtgtgaggtaaaatgttc |
2092903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 43205354 - 43205287
Alignment:
| Q |
59 |
caaccattttcaagtctggaaacacatgat-ggggtggaaggatgtgatttt-aaaaaggttaaaatt |
124 |
Q |
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| T |
43205354 |
caaccattttcaagtctggaaacacatgctgggggtggaagggtgtgattttgaaaaaggttataatt |
43205287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 44303267 - 44303319
Alignment:
| Q |
95 |
gaaggatgtgattttaaaaaggttaaaattagtattttttatggtttgtaagg |
147 |
Q |
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| T |
44303267 |
gaagggtgcgattttagaaaggttaaaattggtatttatgatggtttgtaagg |
44303319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 36806258 - 36806134
Alignment:
| Q |
61 |
accattttcaagtctggaaacacat---gatggggtggaaggatgtgattttaaaaaggttaaaattagtattttttatggtttgtaagg-----gtata |
152 |
Q |
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| T |
36806258 |
accattttcaattctagaaacacaacaagatggggtggaagggtgtgaatttgaaaaggttaaaattggtatttttaattatttgtagtgtggaaggata |
36806159 |
T |
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| Q |
153 |
attgttggggtgtggggtaaaatgt |
177 |
Q |
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| T |
36806158 |
attgttggagtgtggggtaaaatgt |
36806134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 50941457 - 50941525
Alignment:
| Q |
105 |
attttaaaaaggttaaaattagtattttttatggtttgtaagggtataattgttggggtgtggggtaaa |
173 |
Q |
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| T |
50941457 |
atttaaaaaaggttaaaattgatatttttgatgatttgtagggatataattgttgaggtgtggagtaaa |
50941525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 41362573 - 41362612
Alignment:
| Q |
105 |
attttaaaaaggttaaaattagtattttttatggtttgta |
144 |
Q |
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| T |
41362573 |
attttaaaatggttaaaattagtatttttgatggtttgta |
41362612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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