View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18320_low_8 (Length: 506)
Name: NF18320_low_8
Description: NF18320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18320_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 130 - 488
Target Start/End: Original strand, 3435390 - 3435731
Alignment:
| Q |
130 |
atttgtgtgttctaagaaatgaaagtttacttagttttttaataacattnnnnnnntaaaggagccaacttcatttccaaaacgaatctttttacaa-aa |
228 |
Q |
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| T |
3435390 |
atttgtgtgttctaagagatgaaagtttacttagttttttaataacattaaaaaaataaaggagccaacttcatttccaaaacgaatctttttacaacaa |
3435489 |
T |
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| Q |
229 |
cgatttcgtaatatatattttaaatgaaatctcaacattagttatttttgggataataaaaattggattaaagagagtataagagatactattgcgtgga |
328 |
Q |
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| T |
3435490 |
cgatttcgtaatatatattttaaatggaatctcaacattagttatttttgggataataaaaattggattaaagagagtataagagatactattgcatgga |
3435589 |
T |
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| Q |
329 |
atagtatcttttaattggaatatatattttaaaaatttgaaggaggtgcacggattcgaatttatggagtttctttgcaagcatggaatggaannnnnnn |
428 |
Q |
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| T |
3435590 |
ata---------------aagat-tgtgttaa--atttgaaagaggttcacggattcgaatttacggagtttctttgcaagcatggaatgggaaattttt |
3435671 |
T |
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| Q |
429 |
nagattatgtgcttttgattttggtcgattgttgagggtagataactgcacggttgctag |
488 |
Q |
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| T |
3435672 |
tagattatgtgcttttgattttggtcgattgttgagggtagataattgcacggttgctag |
3435731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3435262 - 3435304
Alignment:
| Q |
1 |
gtgaatgcttgtaattggtcacggggatagaaaattaacgaac |
43 |
Q |
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| T |
3435262 |
gtgaatgcttataattggtcacggggatagaaaattaacgaac |
3435304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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