View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_12 (Length: 352)
Name: NF18321_high_12
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 32611670 - 32612007
Alignment:
| Q |
5 |
tttctatagtatcacttcatgttcaaagccgttttcttcccaataaattgatttccaatggagttgatgatgttcaagcagaagaagattcttatctact |
104 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32611670 |
tttctataatagcacttcatgttcaaagccgttttcttcccaataaattgatttccaatggagttgatgatgttcaagcagaagaagattcatatctact |
32611769 |
T |
|
| Q |
105 |
tcttaacaatgataatgagaaaggagttattactgaatcttcttctaattcagaggagtattgtaagcaaatgtatgggtttttgccatgttctaataac |
204 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32611770 |
tcttaacaatgataatgacaaaggagttattactgaatcttcttctaattcagaggagtattgtaaacaaatgtatgggtttttgccatgttctaataac |
32611869 |
T |
|
| Q |
205 |
attcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaacaaatcttcaagattcttg |
304 |
Q |
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| T |
32611870 |
attcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaacaaatattcaagattcttg |
32611969 |
T |
|
| Q |
305 |
gtccaggtgtttttggtgctagtgcttttgatattctt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32611970 |
gtccaggtgtttttggtgctagtgcttttgatattctt |
32612007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 32629877 - 32630213
Alignment:
| Q |
5 |
tttctatagtatcacttcatgttcaaagccgttttcttcccaataaattgatttccaatggagttgatgatgttcaagcagaagaagattcttatctact |
104 |
Q |
| |
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|||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32629877 |
tttctataatagcacttcatgttcaaagccgttta-ttcccaataaattgatttccaatggagttgatgatgttcaagcagaagaagattcatatctact |
32629975 |
T |
|
| Q |
105 |
tcttaacaatgataatgagaaaggagttattactgaatcttcttctaattcagaggagtattgtaagcaaatgtatgggtttttgccatgttctaataac |
204 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32629976 |
tcttaacaatgataatgacaaaggagttattactgaatcttcttctaattcagaggagtattgtaaacaaatgtatgggtttttgccatgttctaataac |
32630075 |
T |
|
| Q |
205 |
attcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaacaaatcttcaagattcttg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32630076 |
attcttggtcatttatttctgatattggtttatgagtacttattgttccatggagaatcatatttggctgctggaggtgaacaaatattcaagattcttg |
32630175 |
T |
|
| Q |
305 |
gtccaggtgtttttggtgctagtgcttttgatattctt |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32630176 |
gtccaggtgtttttggtgctagtgcttttgatattctt |
32630213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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