View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18321_high_13 (Length: 339)

Name: NF18321_high_13
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18321_high_13
NF18321_high_13
[»] chr3 (3 HSPs)
chr3 (17-162)||(54143730-54143875)
chr3 (225-322)||(54143935-54144032)
chr3 (99-162)||(21195284-21195347)
[»] chr4 (1 HSPs)
chr4 (105-151)||(27839317-27839363)
[»] chr1 (1 HSPs)
chr1 (95-161)||(31366892-31366958)
[»] chr6 (1 HSPs)
chr6 (75-161)||(16441768-16441856)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 54143730 - 54143875
Alignment:
Q  17 acctggtttatttatggtagagcagtgtatgatcaatatgatgattattaaattaagagaaatgataaacagtgttcttgatattgattaagggaataaa 116  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |||    
T  54143730 acctggtttatttatggttgagtggtgtatgatcaatatgatgattattaaattaagagaaatgctaaatagtgtttttgatattgattaagggaacaaa 54143829  T
Q  117 aatataaatatattattgaaaagtgatgaaaaatggtgaattcaac 162  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||    
T  54143830 aatagaaatatcttattgaaaagtgatgaaaaatggtaaattcaac 54143875  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 54143935 - 54144032
Alignment:
Q  225 ctaagacacctgttaacaaaatttcttaaattattaattaattattgattgatcgttcttcatgtctctctctacattgtctgacctgacgactacct 322  Q
    |||||||||  |||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  54143935 ctaagacactcgttagcaaaaatccttaaattattaattaattattgattgattgttcttcatgtctctctttacattgtctgacctgacgactacct 54144032  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 21195284 - 21195347
Alignment:
Q  99 attgattaagggaataaaaatataaatatattattgaaaagtgatgaaaaatggtgaattcaac 162  Q
    |||| |||| |||| ||||||| |||||| || ||| ||||||||||||| |||||||||||||    
T  21195284 attggttaaaggaacaaaaatagaaatatcttgttggaaagtgatgaaaagtggtgaattcaac 21195347  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 27839317 - 27839363
Alignment:
Q  105 taagggaataaaaatataaatatattattgaaaagtgatgaaaaatg 151  Q
    |||||||||||||||| |||||||  |||||||| ||||||||||||    
T  27839317 taagggaataaaaatagaaatatagcattgaaaaatgatgaaaaatg 27839363  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 31366892 - 31366958
Alignment:
Q  95 tgatattgattaagggaataaaaatataaatatattattgaaaagtgatgaaaaatggtgaattcaa 161  Q
    |||||||||||||| ||| ||||||| ||||||  | ||  ||||||||||||| ||||||||||||    
T  31366892 tgatattgattaagagaacaaaaatagaaatatcatgttagaaagtgatgaaaagtggtgaattcaa 31366958  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 16441768 - 16441856
Alignment:
Q  75 gaaatgataaacagtgttctt--gatattgattaagggaataaaaatataaatatattattgaaaagtgatgaaaaatggtgaattcaa 161  Q
    |||||| |||| |||||||||  || |||| ||||  ||||| |||||||||||  || |||||||||| ||||||||| |||||||||    
T  16441768 gaaatgctaaagagtgttctttggacattggttaaaagaatataaatataaataatttgttgaaaagtggtgaaaaatgttgaattcaa 16441856  T

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