View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_19 (Length: 245)
Name: NF18321_high_19
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 41425748 - 41425538
Alignment:
| Q |
17 |
cacatgttaggacattgcgccgtcaatggaccaaatcatatccctctagtagccaatcactgcatgatcatcgtcagacagtgatccactaatt-gcgtt |
115 |
Q |
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| T |
41425748 |
cacaggttaggacgctgcgccgtcaatggaccaaatcatatccctctagtagccaatcactgcatgatcatcgtcag----tgatccactaatttgcttt |
41425653 |
T |
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| Q |
116 |
gataatctctcagtaatgcaatgagaaaggtagacaatcaaatataataaatccatcattctactcgacgtcacaatgtttgcagatacatcaccaactc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41425652 |
gataatctctcagtaatgcaatgagaaaggtagacaatcaaatataataaatccatcattctactcgacgtcacaatgtttgcagatgcatcaccaactc |
41425553 |
T |
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| Q |
216 |
tggccgttatctctg |
230 |
Q |
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| T |
41425552 |
cgaccgttatctctg |
41425538 |
T |
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