View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_2 (Length: 777)
Name: NF18321_high_2
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 27393865 - 27393402
Alignment:
| Q |
17 |
caaatactacttcatcatcaacacattcttcatcaccat-------attcaccactacttcttctcaatctcatcttttactaaacaatggccattatca |
109 |
Q |
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| T |
27393865 |
caaatactacttcatcatcaacacattcttcatcaccattcaccatattcaccactacttcttctcaatctcatcttttactaaacaatggccattatca |
27393766 |
T |
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| Q |
110 |
agaaatactccaacaaactacctcaaaatgcagttttgaaacaaatccttaaaagatgttcaagcttaggaaagaatgaacaacctatggatgttccaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27393765 |
agaaatactccaacaaactacctcaaaatgcagttttgaaacaaatccttaaaagatgttcaagcttaggaaagaatgaacaacctatggatgttccaaa |
27393666 |
T |
|
| Q |
210 |
aggtcattttccagtctacgtaggtgaaaaccgtagtagatatattgttccaatatcttttttaactcatcctgagtttcaatcactacttcgtcaagct |
309 |
Q |
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| T |
27393665 |
aggtcattttccagtctacgtaggtgaaaaccgtagtagatatattgttccaatatcttttttaactcatcctgagtttcaatcactacttcgtcaagct |
27393566 |
T |
|
| Q |
310 |
gaagaagaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaacatcaatgattagatgaaagagaatga |
409 |
Q |
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| T |
27393565 |
gaagaagaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaacatcaatgattagatgaaagagaatga |
27393466 |
T |
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| Q |
410 |
catacataaatggttgtgaatatttggagaagatctatatgatcaccaaagatgaagtaaatag |
473 |
Q |
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| T |
27393465 |
catatataaatggttgtgaatatttggagaagatctatatgatcaccaaagatgaagtaaatag |
27393402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 508 - 764
Target Start/End: Complemental strand, 27393367 - 27393109
Alignment:
| Q |
508 |
atcatagccatttaggtttggttctcattgtggatgtaatatttttacatcttattcnnnnnnnnnnnngggagtgggtgatgatgaggcttgcatgttt |
607 |
Q |
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| T |
27393367 |
atcatagccatttaggtttggttctcattgtggatgtaatatttttacatcttattcttttttatttttgggagtgggtgatgatgaggcttgcatgttt |
27393268 |
T |
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| Q |
608 |
caacaacctatttatttttagtggnnnnnnnnngtt--atgtgtattattatgtagctctaactttttactcgtgattaaatcatgggttgaaaattgta |
705 |
Q |
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| T |
27393267 |
caacaacctatttatttttagtggttttttttttttttatgtgtattattatgtagctctaactttttactcgtgattaaatcatgggttgaaaattgta |
27393168 |
T |
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| Q |
706 |
taaaggtttccttgcggaggttatgtgtaattttaccctgtgagagatatttgtttgat |
764 |
Q |
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| T |
27393167 |
taaaggttttcttgcggaggttatgtgtagttttaccctgtgagagatatttgtttgat |
27393109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 199 - 383
Target Start/End: Complemental strand, 55072384 - 55072200
Alignment:
| Q |
199 |
gatgttccaaaaggtcattttccagtctacgtaggtgaaaaccgtagtagatatattgttccaatatcttttttaactcatcctgagtttcaatcactac |
298 |
Q |
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| T |
55072384 |
gatgtcccaaaaggtcattttgctgtttatgttggtgaaaacagaagcagatatattgtaccaatctcattcttaactcaccctcaatttcagtcactcc |
55072285 |
T |
|
| Q |
299 |
ttcgtcaagctgaagaagaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaac |
383 |
Q |
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| T |
55072284 |
ttcgacaagctgaagaagaatttggctttgatcacgacatgggactcaccattccttgtcaagaagttgtttttcgatccctaac |
55072200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 29233654 - 29233689
Alignment:
| Q |
301 |
cgtcaagctgaagaagaatttggttttgatcatgat |
336 |
Q |
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| T |
29233654 |
cgtcaagctgaagaagagtttggttttgatcatgat |
29233689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 397
Target Start/End: Complemental strand, 8510725 - 8510634
Alignment:
| Q |
306 |
agctgaagaagaatttggttttgatcatgatatgggccttactattccttgtcaagaagttgtttttcaatctctaacatcaatgattagat |
397 |
Q |
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| T |
8510725 |
agctgaagatgaatttggcttcaatcatgatatgggacttactatcccttgtgatgaagttttttttgagtccttaacttcaatgatgagat |
8510634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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