View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_21 (Length: 238)
Name: NF18321_high_21
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37127007 - 37126786
Alignment:
| Q |
1 |
aatgaaagtcggaaatttactaaaatacttcatagttaaagtataggttcaaaggtggaacgcatctcgaaagactgtccaaacagaaaaatctcctagg |
100 |
Q |
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| T |
37127007 |
aatgaaagtcggaaatttactaaaatacttcatagttaaagcataggttcaaaggtggaacgcatctcgaaagactgtccaaacagaaaaatctcctagg |
37126908 |
T |
|
| Q |
101 |
tttaaacgtctcaatgaaatcactccacaacacttcactataagtctaaagttctatatccaaacgctacactagttagaacctttcatgggtatctttc |
200 |
Q |
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| T |
37126907 |
tttaaacgtctcaatgaaatcactccacaacacttcactataagtctaaagttctatatccaaacgctacactagttagaacctttcatgggtatctttc |
37126808 |
T |
|
| Q |
201 |
agtgaagttggcctgtaattaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37126807 |
agtgaagttggcctgtaattaa |
37126786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 37329641 - 37329681
Alignment:
| Q |
108 |
gtctcaatgaaatcactccacaacacttcactataagtcta |
148 |
Q |
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| T |
37329641 |
gtctcaatgaaatcactccacaatacttcactaaaagtcta |
37329681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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