View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18321_high_27 (Length: 222)

Name: NF18321_high_27
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18321_high_27
NF18321_high_27
[»] chr3 (2 HSPs)
chr3 (118-202)||(53018185-53018267)
chr3 (17-87)||(53008022-53008090)
[»] chr1 (1 HSPs)
chr1 (101-177)||(16502007-16502083)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 53018185 - 53018267
Alignment:
Q  118 agtggaaagagcggcaggagtattaccagaagaaaaaagttgtctcaaaagagactcaataatttgtgacagacccaatggagtc 202  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  53018185 agtggaaagagcggcaggagcattatcagaagaaaaaagttgtctcaaaagagactcaataatttgtgac--acccaatggagtc 53018267  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 53008022 - 53008090
Alignment:
Q  17 taggccattactctggacttgacaaagacacactacagactccactcatattaaaatcttaatttagaatg 87  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  53008022 taggccattactctggacttgacaaagacacgctacagactccactc--attaaaatcttaatttagaatg 53008090  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 16502083 - 16502007
Alignment:
Q  101 ttagaattacatggtgtagtggaaagagcggcaggagtattaccagaagaaaaaagttgtctcaaaagagactcaat 177  Q
    |||||||||| |||||| || |||||||||||  ||||||||||||||| || ||||||||| | ||||||||||||    
T  16502083 ttagaattacctggtgtggtagaaagagcggccagagtattaccagaaggaagaagttgtctgagaagagactcaat 16502007  T

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