View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_3 (Length: 553)
Name: NF18321_high_3
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 49158804 - 49158501
Alignment:
| Q |
18 |
gttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgtgcccgcgttggtcttacaggattgactg |
117 |
Q |
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| T |
49158804 |
gttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgtgcccgcgttggtcttacaggattgactg |
49158705 |
T |
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| Q |
118 |
ttgctgaacatttccgtgatgctgaaggacaagatgtgcttcttttcgtcgataacattttccgctttactcaagtatgcaattatctagaataattgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49158704 |
ttgctgaacatttccgtgatgctgaaggacaagatgtgcttcttttcgtcgataacattttccgctttactcaagtatgcaattatctagaataattgat |
49158605 |
T |
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| Q |
218 |
gtttttgttgttgttctcctttgaacccgagagttataattgattgacattataaaattatgtacacggattatgtatatgaaatatgaattacattcta |
317 |
Q |
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| T |
49158604 |
gtttttgttgttgttctccttttaacccgagagttataattgattgacattataaaattatgtacacggattatgtatatgaaatatgaactacattcta |
49158505 |
T |
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| Q |
318 |
ttta |
321 |
Q |
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|||| |
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| T |
49158504 |
ttta |
49158501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 294 - 545
Target Start/End: Complemental strand, 49158485 - 49158234
Alignment:
| Q |
294 |
atatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccat |
393 |
Q |
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| T |
49158485 |
atatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccat |
49158386 |
T |
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| Q |
394 |
ctgccgttggttatcaaccaacattgtctactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccat |
493 |
Q |
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| T |
49158385 |
ctgccgttggttatcaaccaacgttgtctactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccat |
49158286 |
T |
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| Q |
494 |
ctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
545 |
Q |
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| T |
49158285 |
ctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
49158234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 324 - 545
Target Start/End: Complemental strand, 49153526 - 49153304
Alignment:
| Q |
324 |
atgtgatatatgatgcat-atgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccatctgccgttggttatcaaccaacattgtct |
422 |
Q |
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| T |
49153526 |
atgtgatatatgatgcctgatgtcactgtaggctaactcagaggtgtctgccctgcttggtcgtattccatctgcggttggttaccaaccaacattgtct |
49153427 |
T |
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| Q |
423 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagatc |
522 |
Q |
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| T |
49153426 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacatctgtccaggctatctatgtgcctgctgatgacttgacagatc |
49153327 |
T |
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| Q |
523 |
ctgctcctgctaccacctttgct |
545 |
Q |
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| T |
49153326 |
ctgctcctgctaccacctttgct |
49153304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 49154728 - 49154564
Alignment:
| Q |
30 |
cagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatt |
129 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||||| ||| | ||||||||||| |||| |
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| T |
49154728 |
cagagtgagagcaaatgtgctcttgtctacggtcaaatgaatgagccccctggtgctcgtgcccgtgtcggtcttactggacttactgttgctgagcatt |
49154629 |
T |
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| Q |
130 |
tccgtgatgctgaaggacaagatgtgcttcttttcgtcgataacattttccgctttactcaagta |
194 |
Q |
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| T |
49154628 |
tccgtgatgctgaaggacaagatgtgcttcttttcgttgacaacattttccgctttactcaagta |
49154564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 27960569 - 27960615
Alignment:
| Q |
375 |
ttgcttggtcgcatcccatctgccgttggttatcaaccaacattgtc |
421 |
Q |
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| T |
27960569 |
ttgcttggtcgtatcccatcggctgttggttatcaaccaacactgtc |
27960615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 27960289 - 27960350
Alignment:
| Q |
28 |
ttcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgt |
89 |
Q |
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|||||||| ||||||||||||| |||| | ||||||||| || || ||||||||||||||| |
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| T |
27960289 |
ttcagagtcaaagcaaatgtgcgtttgtgtgtggtcaaataaatgacccccctggtgctcgt |
27960350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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