View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_7 (Length: 458)
Name: NF18321_high_7
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 32 - 444
Target Start/End: Original strand, 55182 - 55594
Alignment:
| Q |
32 |
acgtcaatttaagtaattaataccaaaaaagaaaagagaaaggaggagggttgattactaatgactacgaatcctaagcaccacacacttgtgcgttaaa |
131 |
Q |
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| T |
55182 |
acgtcaatttaagtaattaataccaaaaaagaaaagagaaaggaggagggttgattactaatgactacgaatcctaagcaccacacacttgtgcgttaaa |
55281 |
T |
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| Q |
132 |
tctgggtttagttatttgggttgatgagaaaaaagaaattagttgaatggagagagagttgtttgtttttgtaatagggggttacggtggttgattgata |
231 |
Q |
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| T |
55282 |
tctgggtttagttatttgggttgatgagaaaaaagaaattagttgaatggagagagagttgtttgtttttgtaatagggggttgcggtggttgattgata |
55381 |
T |
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| Q |
232 |
atggcatataggagaaagcaggttgtatcaaggagttcgaccttcaaggaagatattaatattaatgggcgacatgaattgttagatgataatgaaccaa |
331 |
Q |
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| T |
55382 |
atggcatataggagaaagcaggttgtatcaaggagttcgaccttcaaggaagatattaatattaatgggcgacatgaattgttagatgataatgaaccaa |
55481 |
T |
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| Q |
332 |
atagcgctcctccaattatcaatactaattcccttgctgctcaggccatcaaagcctctgcttctcgtcgtcatccctctcattcctttgctttactcaa |
431 |
Q |
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| T |
55482 |
atagcgctcctccaattatcaatactaattcccttgctgctcaggccatcaaagcctctgcttctcgtcgtcatccctctcattcctttgctttactcaa |
55581 |
T |
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| Q |
432 |
ttcttcttctaat |
444 |
Q |
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| T |
55582 |
ttcttcttctaat |
55594 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 27702225 - 27702163
Alignment:
| Q |
360 |
ttcccttgctgctcaggccatcaaagcctctgcttctcgtcgtcatccctctcattcctttgc |
422 |
Q |
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| T |
27702225 |
ttccctcgccgctcaagccatcaaagcctctactgctcgtcgtcaacccgctctttcctttgc |
27702163 |
T |
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