View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_high_9 (Length: 409)
Name: NF18321_high_9
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 34346905 - 34346538
Alignment:
| Q |
17 |
taaaggatccaatgtctaattgaatagttattgcaatagttaatcagactattttaagacattattattgtccaagtgaatagttattgctatacaattt |
116 |
Q |
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| T |
34346905 |
taaaggatccaatgtctaagtgaatagttattgcaatagttaatcagactattttaagacattattattgtccaagtgaatagttattgctatacaattt |
34346806 |
T |
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| Q |
117 |
caatgtctaatttggctaatcaaaccggcttagataatttcagatttttcaatttttcaacagctatttttaaataaatatagcatttcatggtgcaaac |
216 |
Q |
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| T |
34346805 |
caatgtctaatttggctaatcaaaccggcttagataatttcagattttacaatttt-caacagctatttttaaataaatatagcatttcatggtgcaaac |
34346707 |
T |
|
| Q |
217 |
aaacagcatatatcatgtcattgattattacaatgataattctcaactgataaaaatattttaaagggttagattggacgttgtgccgagattccgactc |
316 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
34346706 |
aaacagcgcatatcatgtcattgattattacaaggataattctcaactgataaaaatatttgaaagggttagattggacgttgtgtcgagattccgactc |
34346607 |
T |
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| Q |
317 |
ctttatttgtaaccaaaagcactaggatggtattataagggatctcttataacttaataaataggcatg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
34346606 |
ctttatttgtaaccaaaagcactaggatggtattataagggatcgcttataaattaataagtaggcatg |
34346538 |
T |
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