View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18321_low_10 (Length: 388)
Name: NF18321_low_10
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 6512813 - 6512456
Alignment:
| Q |
18 |
catatcataggttaaaatatgataatctaggtgaaaggacaaaaacagggttttgttaaaatttatgatgaaaggttcannnnnnnnnn--gttgatgtg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
6512813 |
catatcataggttaaaatatgataatctaggtgaaaggacaaaaacagggttttgttaaaatttatgatgaaaggttgatttattttttttgttgatgtg |
6512714 |
T |
|
| Q |
116 |
ggaaggatgaatgggagataaggagaagaatacctactggaattgaggggtttagtacgaacatgaatgagaatgcaattagagttcttctttagaaggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6512713 |
agaaggatgaatgggagataaggagaagaatacctactggaattgagaggtttggtacgaacatgaatgagaatgcaattggagttcttctttagaaggt |
6512614 |
T |
|
| Q |
216 |
ggtccaccgcccatttcaccgcgcactggctattccgaccggtgttgatggcaatgacggtggttttggcggcggtggcagctcctaattcattagtaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6512613 |
ggtccaccgcccatttcaccgcgcactggctattccgaccggtgttgatggcaatgacggtggttttggcggcggtggcagctcctaattcattagtaat |
6512514 |
T |
|
| Q |
316 |
catttgcatgaagaattaaggttagttacttttttagaaaaaataagctcttgtctctg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6512513 |
catttgcatgaagaattaaggttagttacttttttaga-aaaataagctcttgtctctg |
6512456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University