View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_low_11 (Length: 371)
Name: NF18321_low_11
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 24641944 - 24642119
Alignment:
| Q |
1 |
tggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttga |
100 |
Q |
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| T |
24641944 |
tggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttga |
24642043 |
T |
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| Q |
101 |
agctaaagtcaccaacaaacccatcagaataaagtaagctttgtaattacgcgtaatcattttgttttgattgaac |
176 |
Q |
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| T |
24642044 |
agctaaagtcaccaacaaacccatcagaaaaaagtaagctttgtaattacgcgtaatcattctgttttgattgaac |
24642119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 24693313 - 24693488
Alignment:
| Q |
1 |
tggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
24693313 |
tggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaatgggttagtgtttaaagcttcatacttagttga |
24693412 |
T |
|
| Q |
101 |
agctaaagtcaccaacaaacccatcagaataaagtaagctttgtaattacgcgtaatcattttgttttgattgaac |
176 |
Q |
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| T |
24693413 |
agctaaattcaccaacaaacccatcaaaataaaataagctttgtaattatgcgtaatcattctgttttgattgaac |
24693488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 24642185 - 24642298
Alignment:
| Q |
242 |
cattgttagtggacaatggtgggaaggtttaataaaacacagagaaggataaagtcagttaattatttgaatagtcatcctggtcatggttggctgacag |
341 |
Q |
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| T |
24642185 |
cattgttagtggacaatggtgggaaggtttgataaaacacagagaaggataaagtcagttaattatttgaatagtcatcctggtcatggttggctgacag |
24642284 |
T |
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| Q |
342 |
gagccgaggatatt |
355 |
Q |
| |
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|||||||||||||| |
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| T |
24642285 |
gagccgaggatatt |
24642298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 24694459 - 24694574
Alignment:
| Q |
61 |
gttgaaacgggttggtgtttaaagcttcatacttagttgaagctaaagtcaccaacaaacccatcagaataaagtaagctttgtaattacgcgtaatcat |
160 |
Q |
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| T |
24694459 |
gttgaaacgggttagtgtttaaagcttcatacttagttgaagctaaagacaccaacaaacccatcagaataaaataagctttgtaattacgcgtaatcat |
24694558 |
T |
|
| Q |
161 |
tttgttttgattgaac |
176 |
Q |
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| T |
24694559 |
tctgttttgattgaac |
24694574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 24733348 - 24733205
Alignment:
| Q |
1 |
tggatgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggt------tggtgtttaaagcttcatactt |
94 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | || ||||||||||||||||| |
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| T |
24733348 |
tggatgaaactgtgtgacaacatagagatgtcaaaaacagcaacaaagttggggatgatggttgaaatgggttagtactagtttttaaagcttcatactt |
24733249 |
T |
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| Q |
95 |
agttgaagctaaagtcaccaacaaacccatcagaataaagtaag |
138 |
Q |
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|||| |||||||| |||||||| ||||| |||||||| |||| |
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| T |
24733248 |
cgttgcagctaaagccaccaacatgcccattagaataaaataag |
24733205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 24648718 - 24648887
Alignment:
| Q |
8 |
aactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttag-ttgaagctaa |
106 |
Q |
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|||||| |||| | ||||||||||||||||||| | ||||||| || | ||||||| || ||||| ||||||||| ||| ||| || ||| |||||| |
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| T |
24648718 |
aactgcatgactaaatagagatgtcaaaaacagtagcattgttatgggtggtggttggaatgggttagtgtttaaaccttgatatttccattgcagctaa |
24648817 |
T |
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| Q |
107 |
agtcaccaacaaacccatcagaataaagtaagcttt---gtaattacgcgtaatcattttgttttgattg |
173 |
Q |
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|| |||||||||||||||||||||||| ||| |||| ||| ||| ||||||||||||| ||||||||| |
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| T |
24648818 |
aggcaccaacaaacccatcagaataaaataaactttatagtacttatgcgtaatcattttattttgattg |
24648887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 24695466 - 24695507
Alignment:
| Q |
279 |
cacagagaaggataaagtcagttaattatttgaatagtcatc |
320 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| |
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| T |
24695466 |
cacaaagaaggataaagtccgttaattatttgaatagtcatc |
24695507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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