View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18321_low_12 (Length: 369)

Name: NF18321_low_12
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18321_low_12
NF18321_low_12
[»] chr4 (1 HSPs)
chr4 (7-348)||(47967798-47968142)
[»] chr5 (4 HSPs)
chr5 (131-309)||(37338096-37338274)
chr5 (131-309)||(11299903-11300076)
chr5 (14-81)||(11300156-11300223)
chr5 (7-81)||(37337942-37338016)
[»] chr6 (2 HSPs)
chr6 (131-309)||(15296926-15297088)
chr6 (19-81)||(15296784-15296846)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 47968142 - 47967798
Alignment:
Q  7 gaagcataggatgtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctgnnnnnnnnnnnnnnnna---atggt 103  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                    |||||    
T  47968142 gaagtataggatgtacaccatagattgggatgttgattgtgtgggttttcaaatgtttcgattttaaaatttctgttttttgattttttttttttatggt 47968043  T
Q  104 tagttttatgacaatgtttatttaaatacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47968042 tagttttatgacaatgtttatttaaatacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgt 47967943  T
Q  204 ggagaagtttgtctgtgaagaagtttgtcttatccgacccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaagggttctcat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47967942 ggagaagtttgtctgtgaagaagtttgtcttatccgacccaaaatccagtttctgtagctcctcccttggctctttactttcttttaaaagggttctcat 47967843  T
Q  304 gctaaaacatccgtggtttaatgagataacccttatttcctgctt 348  Q
    |||||||| | ||||||||||||||||||||||||||||||||||    
T  47967842 gctaaaaccttcgtggtttaatgagataacccttatttcctgctt 47967798  T

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Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 37338096 - 37338274
Alignment:
Q  131 acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  37338096 acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttctgtggaaaagtttgtctgcgaagaagtttg 37338195  T
Q  231 tcttatccgacccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaagggttctcatgctaaa 309  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  37338196 tcttatctgacccaaagtccagtttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaa 37338274  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 131 - 309
Target Start/End: Complemental strand, 11300076 - 11299903
Alignment:
Q  131 acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg 230  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11300076 acgtaatggtcacgtgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctttgaagaagtttg 11299977  T
Q  231 tcttatccgacccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaagggttctcatgctaaa 309  Q
    |||     ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11299976 tct-----gacccaaaatccagtttttgtagctcctcccttggctctctgctttcttttaaaagggttctcatgctaaa 11299903  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 11300223 - 11300156
Alignment:
Q  14 aggatgtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg 81  Q
    |||| ||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||    
T  11300223 aggacgtacaccatagattgcgaagttgattgtgtgggttttcagatgtttcgattttaaaatttctg 11300156  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 37337942 - 37338016
Alignment:
Q  7 gaagcataggatgtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg 81  Q
    |||| |||||| ||||||||||||||| || |||||| ||||||||||||| |||||| ||||||||| ||||||    
T  37337942 gaagtataggacgtacaccatagattgtgaagttgattgtgtgggttttcagatgttttgattttaaattttctg 37338016  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 15296926 - 15297088
Alignment:
Q  131 acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||                |||||||||    
T  15296926 acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttctgtgg----------------agaagtttg 15297009  T
Q  231 tcttatccgacccaaaatccagtttctgtagctcctcccttggctctctactttcttttaaaagggttctcatgctaaa 309  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  15297010 tcttatctgacccaaagtccagtttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaa 15297088  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 15296784 - 15296846
Alignment:
Q  19 gtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg 81  Q
    ||||||||||||||| || |||||| || |||||||||| |||||||||||||||||||||||    
T  15296784 gtacaccatagattgcgaagttgattgtctgggttttcagatgtttcgattttaaaatttctg 15296846  T

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