View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_low_15 (Length: 327)
Name: NF18321_low_15
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 72 - 315
Target Start/End: Complemental strand, 14028137 - 14027888
Alignment:
| Q |
72 |
gttcgtgttatttttgtaagactcttgttcaacccttgtactacttgagctaggggtacccattttatggcatttaaattttattttgcaatgttaaaaa |
171 |
Q |
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| T |
14028137 |
gttcgtgttatttttgtaagactcttgttcaacccttgtactatttgagctaggggtaccgtttttatggcatttaaattttattttgccttgttaaaaa |
14028038 |
T |
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| Q |
172 |
tcaaaataatgtatatcgtataacattaatcaaaagaaaaagattaccaaggaaaaatcgacgaatcatatgattattaattatggttgattatatttct |
271 |
Q |
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| T |
14028037 |
tcaaaatactgtatatcgtataacataaatcaaaagaaaaagattacaaaggaaaaatcgacgaatcatataattattaattatggttgattatatttct |
14027938 |
T |
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| Q |
272 |
tttg-----ttttttatgaaagactc-taaagtcttctacgtttttcccc |
315 |
Q |
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| T |
14027937 |
tttgttttgttttttatgaaagactcttaaagtcttctacgtttttcccc |
14027888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 14113345 - 14113308
Alignment:
| Q |
271 |
ttttgttttttatgaaagactctaaagtcttctacgtt |
308 |
Q |
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| T |
14113345 |
ttttgttttttatgaaagactctaaagtcttctacgtt |
14113308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 14107185 - 14107148
Alignment:
| Q |
271 |
ttttgttttttatgaaagactctaaagtcttctacgtt |
308 |
Q |
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| T |
14107185 |
ttttgttttttatgaaagactataaagtcttcaacgtt |
14107148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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