View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_low_18 (Length: 304)
Name: NF18321_low_18
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 33159363 - 33159094
Alignment:
| Q |
16 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159363 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
33159264 |
T |
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| Q |
116 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33159263 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg--ttttttttttctttctcaatttaaacttgtcaacaata |
33159166 |
T |
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| Q |
216 |
aagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaac |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159165 |
aagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaac |
33159094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 33182207 - 33181937
Alignment:
| Q |
16 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182207 |
atcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctc |
33182108 |
T |
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| Q |
116 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaatg |
215 |
Q |
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| T |
33182107 |
cacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg-tttttttttttctttctcaatttaaacttgtcaacaata |
33182009 |
T |
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| Q |
216 |
aagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaac |
287 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182008 |
aagagaatggacagtatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaac |
33181937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 33140737 - 33140630
Alignment:
| Q |
22 |
tcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaa |
121 |
Q |
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||||| ||||| || ||||||||||||| |||||||||| | || |||||| |||||| ||||| |||||||||||||||||||||||||||||| ||| |
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| T |
33140737 |
tcaattgaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaa |
33140638 |
T |
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| Q |
122 |
tgatgaca |
129 |
Q |
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|||||||| |
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| T |
33140637 |
tgatgaca |
33140630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33287371 - 33287514
Alignment:
| Q |
18 |
caactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctcca |
117 |
Q |
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||||||||| ||||| |||| |||||||||| | | ||||||| | |||||| | | |||| ||||||| ||| |||||| ||||||||||||||||| |
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| T |
33287371 |
caactcaattgaagtctttgcctgcttaatatttgtatcatttgctagggcagtagcaaacttggtgaattcttggatccatgccttatctttacctcca |
33287470 |
T |
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| Q |
118 |
caaatgatgacaatgtcatcctccctcttcatttttcaaaggaa |
161 |
Q |
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||||||| |||| | |||||| |||||||||||||||||| |
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| T |
33287471 |
taaatgataacaaacttctcctcctccttcatttttcaaaggaa |
33287514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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