View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_low_30 (Length: 230)
Name: NF18321_low_30
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 46532365 - 46532175
Alignment:
| Q |
19 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46532365 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46532266 |
T |
|
| Q |
119 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46532265 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc |
46532175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 46524812 - 46524622
Alignment:
| Q |
19 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
118 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46524812 |
cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46524713 |
T |
|
| Q |
119 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || ||||| |
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| T |
46524712 |
attcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctcc |
46524622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 46490518 - 46490328
Alignment:
| Q |
19 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
118 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||| |
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| T |
46490518 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
46490419 |
T |
|
| Q |
119 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| |
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| T |
46490418 |
attcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
46490328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 46322744 - 46322937
Alignment:
| Q |
16 |
gagcacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactct |
115 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||| |
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| T |
46322744 |
gagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactct |
46322843 |
T |
|
| Q |
116 |
ggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
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|||| || ||||||||||| |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
46322844 |
ggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc |
46322937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 46479316 - 46479126
Alignment:
| Q |
19 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
118 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||| |||||||||| |
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| T |
46479316 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46479217 |
T |
|
| Q |
119 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||| || ||||| |
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| T |
46479216 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcc |
46479126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 46520746 - 46520556
Alignment:
| Q |
19 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
118 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||| |||||||||| |
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| T |
46520746 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46520647 |
T |
|
| Q |
119 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||| || ||||| |
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| T |
46520646 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcc |
46520556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 46494819 - 46494632
Alignment:
| Q |
16 |
gagcacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactct |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||| |
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| T |
46494819 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactct |
46494720 |
T |
|
| Q |
116 |
ggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactga |
203 |
Q |
| |
|
|||| || ||||||||||| |||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| ||||| || ||||| |
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| T |
46494719 |
ggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactga |
46494632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 46326455 - 46326633
Alignment:
| Q |
22 |
agaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtatt |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||| | |
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| T |
46326455 |
agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact |
46326554 |
T |
|
| Q |
122 |
catggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacac |
200 |
Q |
| |
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| ||||||||||| |||| ||||| || |||||||||||||| || |||||||| ||||| ||||||||||||||||| |
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| T |
46326555 |
cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacac |
46326633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 46517108 - 46516915
Alignment:
| Q |
16 |
gagcacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactct |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||||||| || || ||| ||| |
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|
| T |
46517108 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
46517009 |
T |
|
| Q |
116 |
ggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacactgaggctcc |
209 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||| ||||||| || |||||| |||| ||||||||||| ||||||| ||||||||||| ||||| |
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|
| T |
46517008 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcc |
46516915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 7475308 - 7475387
Alignment:
| Q |
121 |
tcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacac |
200 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||| |||| | ||| ||| | ||||| ||||||||||||||||| |
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| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacac |
7475387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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