View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18321_low_31 (Length: 228)
Name: NF18321_low_31
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 38304344 - 38304160
Alignment:
| Q |
24 |
caatggctacttaaaatcaaattttcagccaacctctccataatagaacatcactactcgccgcgggacacaaccaacccatatacatcgccttccatac |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38304344 |
caatagctacttaaaatcaaattttcagccaacctctccataatagaacatcactactcgccgcgggacacaaccaacccatatacatcgccttccatac |
38304245 |
T |
|
| Q |
124 |
catgaacgtcaccaagttcctaccccacctcgcatcgtcgtatcgtatgcgtttcgtactacaggaatctcatacaccgtcgaatctgtg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38304244 |
catgaacgtcaccaagttcctaccccacctcgcatcgtc-----gtatgcgtttcgtactgcaggaatctcatacaccgtcgaatctgtg |
38304160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 44166488 - 44166540
Alignment:
| Q |
30 |
ctacttaaaatcaaattttcagccaacctctccataatagaacatcactactc |
82 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
44166488 |
ctacttaagctcaaatttgcagccaacctctccataacagaacatcactactc |
44166540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 44166615 - 44166659
Alignment:
| Q |
80 |
ctcgccgcgggacacaaccaacccatatacatcgccttccatacc |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
44166615 |
ctcgccgcgggacacaaccaacgcatatacaccgccttccatacc |
44166659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University