View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_low_4 (Length: 549)
Name: NF18321_low_4
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Complemental strand, 40020434 - 40019911
Alignment:
| Q |
17 |
aaaatttattttcaaaaacaagcatcatttaagaaattcaaaaagtggtcacaagtttatgcagtatacgtagagcacgtgggattacacccattctcat |
116 |
Q |
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| T |
40020434 |
aaaatttattttcaaaaacaagcatcatttaagaaattcaaaaagtggtcacaagtttatgcagtatacgtagagcacgtgggattacacccattctcat |
40020335 |
T |
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| Q |
117 |
tttggcat--gttattttatgccgtggttcatctataactactctttatatcaactccataaaagagatttgtatgcattgaaaaagttgatctcaccaa |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40020334 |
tttggcatatgttattttatgccgtggttcatctataactactctttatatcaactccataaaagagatttgtatgcattgaaaaagttgatcttaccaa |
40020235 |
T |
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| Q |
215 |
gagttaagcaaccacaaaaattttaatatgcacaacatcttattacttagccaggatgaaaaatctacggggtaaagtctttttcaaacgatttaaggta |
314 |
Q |
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| T |
40020234 |
gagttaagcaaccacaaaaattttaatatgcacaacatcttattacttagccaggatgaaaaatctacggggtaaagtctttttcaaacgatttaagata |
40020135 |
T |
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| Q |
315 |
aaaccggacaaaacgaaaatgacagtaatcgatagagatgacgtgcatacgtggaaaggcatacttccaaacaaaaaatggttatagttttatccctccg |
414 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40020134 |
aaaccggacaaaacgaaaatgacactaattggtagagatgacgtgcatacgtggaaaggcatacttccaaacaaaaaatggttatagttctatacctccg |
40020035 |
T |
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| Q |
415 |
tcctagacaaggaagatcctttgatggcctagggaaaccatgtgcctcgcacatgaagagagcaataactttcagggagtttactattactctctctcct |
514 |
Q |
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| T |
40020034 |
tcctagacaagggagatcctttgatggcctagggaaaccatgtgcctcgcacatgaagagagcaataactttcagggagtttactattactccctctcct |
40019935 |
T |
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| Q |
515 |
aaatcaagtgagtcatttgttcat |
538 |
Q |
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| T |
40019934 |
aaatcaagtgagtcatttgttcat |
40019911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 55228933 - 55228861
Alignment:
| Q |
400 |
agttttatccctccgtcctagacaaggaagatcctttgatgg---cctagggaaaccatgtgcctcgcacatg |
469 |
Q |
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| T |
55228933 |
agttctatacctccatcctagataaaggagatcctttgatggtggcttagggaaaccatgtgcctcgcacatg |
55228861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 469
Target Start/End: Complemental strand, 23398803 - 23398762
Alignment:
| Q |
428 |
agatcctttgatggcctagggaaaccatgtgcctcgcacatg |
469 |
Q |
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| T |
23398803 |
agatcctttgatgacttagggaaaccgtgtgcctcgcacatg |
23398762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 31988964 - 31988920
Alignment:
| Q |
423 |
aaggaagatcctttgatggcctagggaaaccatgtgcctcgcaca |
467 |
Q |
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| T |
31988964 |
aagggagatcctttgatggcttagggaaaccatgtgtctcacaca |
31988920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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