View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18321_low_5 (Length: 547)
Name: NF18321_low_5
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 37111927 - 37111408
Alignment:
| Q |
18 |
aggcaacgccgcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcct |
117 |
Q |
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| T |
37111927 |
aggcaacgccgcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccct |
37111828 |
T |
|
| Q |
118 |
gattatggccatcttgaccctattgctattggagccctagtagccatcacagcccttgcagtttacagcaccaaaggttcttccatcttcaactacatag |
217 |
Q |
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|| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37111827 |
gactatggccatcttgaccctattgctattgcagctctagtagccatcacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatag |
37111728 |
T |
|
| Q |
218 |
ccacaatgttccacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttca |
317 |
Q |
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| T |
37111727 |
ccacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttca |
37111628 |
T |
|
| Q |
318 |
cggtatggtcaatgcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacatt |
417 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111627 |
cggtatggtcaatgcttccgctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacatt |
37111528 |
T |
|
| Q |
418 |
ccaattggtctagttggttcaatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttg |
517 |
Q |
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| T |
37111527 |
ccaattggtctagttggttcaatgacgattacaacaataatttattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttg |
37111428 |
T |
|
| Q |
518 |
atgctcctttctctgctgct |
537 |
Q |
| |
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||||||||||||||| |||| |
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| T |
37111427 |
atgctcctttctctgttgct |
37111408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 37120181 - 37119670
Alignment:
| Q |
19 |
ggcaacgccgcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctg |
118 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37120181 |
ggcaacgcggcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctg |
37120082 |
T |
|
| Q |
119 |
attatggccatcttgaccctattgctattggagccctagtagccatcacagcccttgcagtttacagcaccaaaggttcttccatcttcaactacatagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37120081 |
attatggccatcttgaccctattgctattggagccctagtagccatcacagctcttgcagtttacagcaccaaaggttcttccatcttcaactacatagc |
37119982 |
T |
|
| Q |
219 |
cacaatgttccacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
37119981 |
cacaatgttccacatggctgtcattatcttcatagtaatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggttgcat |
37119882 |
T |
|
| Q |
319 |
ggtatggtcaatgcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattc |
418 |
Q |
| |
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|| ||||||| | |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
37119881 |
ggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgctgtttcaaccatggctgaagaaactaaaaaccctggtagagacattc |
37119782 |
T |
|
| Q |
419 |
caattggtctagttggttcaatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttga |
518 |
Q |
| |
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| || ||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
37119781 |
ctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactaggagcaacactttgtcttatgcagaattacaaagaacttgatactga |
37119682 |
T |
|
| Q |
519 |
tgctcctttctc |
530 |
Q |
| |
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|||||||||||| |
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| T |
37119681 |
tgctcctttctc |
37119670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 37136084 - 37136218
Alignment:
| Q |
31 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctgattatggccatc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| | ||||||||||| ||||||||||| |||| |
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| T |
37136084 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgattatggtcatc |
37136183 |
T |
|
| Q |
131 |
ttgaccctattgctattggagccctagtagccatc |
165 |
Q |
| |
|
|||||||||||||| || |||||| |||||||| |
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| T |
37136184 |
ttgaccctattgctgttatagccctcatagccatc |
37136218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 337 - 504
Target Start/End: Original strand, 37136390 - 37136557
Alignment:
| Q |
337 |
gctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggtt |
436 |
Q |
| |
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||||| |||||||||||||| | ||||||||||| || ||||| ||||| || ||||| || |||||||| ||||||||||| |||||||| || || | |
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| T |
37136390 |
gctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtaggat |
37136489 |
T |
|
| Q |
437 |
caatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaa |
504 |
Q |
| |
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||||| |||| || | || ||||||| ||| ||| ||||||| || ||||||||||| |||||| |
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| T |
37136490 |
caatggtaattatcactttcatatattgctcactagcaacaacactatgccttatgcagaactacaaa |
37136557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
352 |
gcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaa |
451 |
Q |
| |
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||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||| | ||| || || ||||||||| | || |||||||| |||||| |
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| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
|
| Q |
452 |
ca |
453 |
Q |
| |
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|| |
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|
| T |
10681012 |
ca |
10681013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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