View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18321_low_6 (Length: 478)
Name: NF18321_low_6
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 10369407 - 10369027
Alignment:
| Q |
7 |
cttttcacatatattatggctgatgtgtgcagatggaaatatgaaacagtagaaaatcttggtggttcagaattttccaaggcctcaaaacgctctgctc |
106 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10369407 |
cttttcacacatattatggctgatgggtgcagatggaaatatgaaacagtagaaaatcttggtggttcagaattttccaagacctcaaaacgctctgctc |
10369308 |
T |
|
| Q |
107 |
catgtccagtgcctaattcttcagtgagctcaaaacacttggcttggagacagagttttctccatcttcggatcgatggatgaacatgaatgaagaaata |
206 |
Q |
| |
|
|| ||| || ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10369307 |
caagtctagggccaaattcttcagtgagctcaaaacacttggctttgagacagaggtttctccatcttcggatcgatggatgaacatgaatgaagaaata |
10369208 |
T |
|
| Q |
207 |
atgaagattggagatgttactgtcttcaaagatagagttgaagatggtgttgtttttagaataaatatctttttggcctctctccaagggtgacaaannn |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10369207 |
atgaagattggagatggtactgtcttcaaagatagagttgaagatggtgttgtttttagagtaaatatctttttggcctctctccaagggtgacaaattt |
10369108 |
T |
|
| Q |
307 |
nnnnnnnnnnnnnnnnnnnatgtgtatagtcttgaacgaatatatttggactctatctgcacaaatgatatattaacatct |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
10369107 |
gttgtttttgttttgttttatgtgtatagtcttgaacgaatatatttggactctatctgcacaaatgacatattaatatct |
10369027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 10368973 - 10368908
Alignment:
| Q |
407 |
tgaacaactatttttaggacatgtgggacaatcagaggtatacaaataaatgtatgtattgatgatg |
473 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10368973 |
tgaacaactatttttaggatatgtgg-acaatcagaggtatacaaataaatgtatgtattgaagatg |
10368908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University