View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18321_low_8 (Length: 416)
Name: NF18321_low_8
Description: NF18321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18321_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 86 - 314
Target Start/End: Complemental strand, 19245393 - 19245164
Alignment:
| Q |
86 |
atttttgcaatcaagcttagatgtggccctgcgtgcattattgggtgttcaattgagctttggattgt-tttaggactaagtttctagcaagaaagtttg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
19245393 |
atttttgcaatcaagcttagatgtggccttgcatgcattattgggtgttcaattgagctttggattggctttaggattaagtttctagcaagaaagtttg |
19245294 |
T |
|
| Q |
185 |
aagttagaagcttgggtgtgtaaaagtgggggtttaagcttgtgattttcggttttgcttggaaatgtataaggtaataaaaataagctgttttaagaat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19245293 |
aagttagaagcttgggtgtgtaaaagtgggggtttaagcttgtgattttgggttttgcttggaaatgtataaggtaataaaaataagctgttttaagaat |
19245194 |
T |
|
| Q |
285 |
gttaatttatagcttaacattgtttctgtc |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
19245193 |
gttaatttatagcttaacattgtttttgtc |
19245164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 210 - 405
Target Start/End: Complemental strand, 19248322 - 19248126
Alignment:
| Q |
210 |
gtgggggtttaagcttgtgattttcggttttgcttggaaatgtataaggtaataaaaataagctgttttaagaatgttaatttatagcttaacattgttt |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19248322 |
gtgggggtttaagcttgtgattttgagttttgcttggaaatgtataaggtaataaaaataagctgttttaagaatgttaatttatagcttaacattgttt |
19248223 |
T |
|
| Q |
310 |
ctgtcaattgttttgcaactggacaacaaatcatccaccaccttagctaagaatccagttctacatggaaa-taaacatataaaagttggatttcat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
19248222 |
ctgtcaattgttttgcaactggacaacaaatcatccaccaccttagctaagaatccagttctacatggaaagtaaacatataaaagctggatttcat |
19248126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 19248481 - 19248323
Alignment:
| Q |
18 |
tcaacaagcctaattcctcatgactcttgcttagccgagccacctcctcccttttatcatctttggagatttttgcaatcaagcttagatgtggccctgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
19248481 |
tcaacaagcctaattcctcatgactcttgcttagccgagccacctcctcccttttgtcatctttggagatttttgcaatcaagcttagatgtgaccttgc |
19248382 |
T |
|
| Q |
118 |
gtgcattattgggtgttcaattgagctttggattgttttaggactaagtttctagcaag |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19248381 |
atgcattattgggtgttcaattgagctttggattgttttaggactaagtttctagcaag |
19248323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 14191723 - 14191637
Alignment:
| Q |
217 |
tttaagcttgtgattttcggttttgcttggaaatgtataaggtaataaaaa--taagctgttttaagaatgttaatttatagcttaa |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||| || | ||||||||||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14191723 |
tttaagcttgtgattttgtgttttgcttggagatttgcaaggtaataaaaaaataagttgttttaagaatgttaacttatagcttaa |
14191637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University