View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_high_1 (Length: 589)
Name: NF18322_high_1
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Complemental strand, 27261760 - 27261200
Alignment:
| Q |
11 |
atcatcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaag |
110 |
Q |
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| T |
27261760 |
atcatcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaag |
27261661 |
T |
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| Q |
111 |
aatttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttca |
210 |
Q |
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| T |
27261660 |
aatttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttca |
27261561 |
T |
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| Q |
211 |
ctttaagtcactaaagttgttgaatgtgacaaccacatgaaattcaaccatctctagtggtaaagtcaaataagaacctgttcctaacttctagagctca |
310 |
Q |
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| T |
27261560 |
ttttaagtcactaaagttgttgaatgtgataaccacatgaaattcaaccatctctagtggtaaagccaaataagaacctgttcctaacttctagagctca |
27261461 |
T |
|
| Q |
311 |
acaagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaa |
410 |
Q |
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| T |
27261460 |
acaagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaa |
27261361 |
T |
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| Q |
411 |
actagaataccactatgcnnnnnnngaattcaaacttgcttatagatatgaatatttaacttcaagcatatttgtttaaagaactaagttcagctatact |
510 |
Q |
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| T |
27261360 |
actagaataccactatgcaaaaaaagaattcaaacttgcttatagatatgaatatttaacttcaagcatatttgtttaaagaactaagttcagctatact |
27261261 |
T |
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| Q |
511 |
aattggcaagttttttaagttaagtatcataccgtggtcttaacgagctcattggcatagg |
571 |
Q |
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| T |
27261260 |
aattggtaagttttttaagttaagtatcataccgcggtcttaacgagctcattggcatagg |
27261200 |
T |
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