View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_high_11 (Length: 397)
Name: NF18322_high_11
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 32617262 - 32616892
Alignment:
| Q |
12 |
atgaagattaaggagatagcatgtcaagcaaaaataatcggcacaattgtaacatttggaggaacattgctaatggctctgtacaaaggtcctgtagtta |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32617262 |
atgaagatcaaggagatagcatgtcaagcaaaaataatcggcacaattgtaacatttggaggaacattgctaatggctctgtacaaaggtcctgtggtta |
32617163 |
T |
|
| Q |
112 |
gtgttgtgaggccatccatcagtcatgctacccgccagcctgaaaatgtgagcgacccctccggtgaccggtggatcatagggacatgtttcctcctcat |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617162 |
gtgttgtgaggtcatccatcagtcatgctacccgccagcctgaaaatgtgagcgacccctccggtgaccggtggatcatagggacatgtttcctcctcat |
32617063 |
T |
|
| Q |
212 |
tgggtgtgctggcttttccgcgttttacatattgcaggtaatttttattttattttgaaatcgacaatgttagtattgttatcgataaaaaattaatgta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
32617062 |
tgggtgtgctggcttttccgcgttttacatattgcaggtaattttaattttattttgaaatcgacaatgttagtgttgttatcgataaaaaattaacgta |
32616963 |
T |
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| Q |
312 |
tgatatgagaaacatgtatgtatatgtttggtttaatgtgatgattttgtaggccataacgttgagaaagt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616962 |
tgatatgagaaacatgtatgtatatgtttggtttaatgtgatgattttgtaggccataacgttgagaaagt |
32616892 |
T |
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