View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18322_high_16 (Length: 323)

Name: NF18322_high_16
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18322_high_16
NF18322_high_16
[»] chr3 (1 HSPs)
chr3 (10-303)||(46227542-46227819)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 46227819 - 46227542
Alignment:
Q  10 ataattctcatgcatatgagtgatgatgatgataattaatggtccccctccctcatttccagttctgtatgtcttgctataaatcaacattcaaatcatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46227819 ataattctcatgcatatgagtgatgatgatgataattaatggtccccctccctcatttccagttctgtatgtcttgctataaatcaacattcaaatcatc 46227720  T
Q  110 aaataattatatattcttattcttataaattaatactagttttctaaccccactgcctcaaataattaatcattcatattgatctttttgcgtacacact 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||    
T  46227719 aaataattatatattcttattcttataaattaatactagttttctaaccccactgcctcaa----------------attgatctttttgcgtacacact 46227636  T
Q  210 gtgagtctgtgctggatgcgatcccttttcattgcaattttcatgaacccgtgttcaactaaaaagccaaacggagttatactagtactacaaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46227635 gtgagtctgtgctggatgcgatcccttttcattgcaattttcatgaacccgtgttcaactaaaaagccaaacggagttatactagtactacaaa 46227542  T

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