View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_high_26 (Length: 247)
Name: NF18322_high_26
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 42468007 - 42468214
Alignment:
| Q |
15 |
ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42468007 |
ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctc |
42468106 |
T |
|
| Q |
115 |
aataagtatacactcattattaatggaaaagacatattgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcct |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42468107 |
aataagcatacactcattattaatggaaaagacatattgactagt-acaatatatttgtagggatgaaatacataatgaagcttatattattttcatcct |
42468205 |
T |
|
| Q |
215 |
gcgtgatgc |
223 |
Q |
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||||||||| |
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| T |
42468206 |
gcgtgatgc |
42468214 |
T |
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