View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18322_high_28 (Length: 232)

Name: NF18322_high_28
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18322_high_28
NF18322_high_28
[»] chr1 (3 HSPs)
chr1 (6-232)||(33769107-33769333)
chr1 (6-232)||(33772389-33772621)
chr1 (66-227)||(33764252-33764413)
[»] chr4 (3 HSPs)
chr4 (149-222)||(8349194-8349267)
chr4 (170-228)||(41238474-41238532)
chr4 (149-197)||(49465283-49465331)
[»] chr8 (5 HSPs)
chr8 (158-222)||(25224872-25224936)
chr8 (158-204)||(26168446-26168492)
chr8 (149-222)||(26396048-26396121)
chr8 (168-229)||(15688431-15688492)
chr8 (149-229)||(1093114-1093194)
[»] chr7 (3 HSPs)
chr7 (149-229)||(29462850-29462930)
chr7 (149-229)||(19844605-19844685)
chr7 (147-197)||(19877567-19877617)
[»] chr2 (2 HSPs)
chr2 (170-228)||(28642196-28642254)
chr2 (168-228)||(28691399-28691459)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 33769333 - 33769107
Alignment:
Q  6 agatcccacgtatgtttcattctcccaatttgaacttgaactctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33769333 agatcccacgtatgtttcattctcccaatttgaacttgaactctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaaga 33769234  T
Q  106 tataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattcca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33769233 tataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccg 33769134  T
Q  206 gttagtgttttggatgagatgattagt 232  Q
    |||| ||||||||||||||||||||||    
T  33769133 gttattgttttggatgagatgattagt 33769107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 33772621 - 33772389
Alignment:
Q  6 agatcccacgtatgtttcattctcccaatttgaacttgaac------tctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagacct 99  Q
    |||||||||||||||| |||| |||||||||||||||||||      ||   ||||||||||||  ||||||||||||||| |||||| |||||||||||    
T  33772621 agatcccacgtatgttccattatcccaatttgaacttgaacatgaactccactcatgaaagtgacccatcttccaagttcaatgtccccatcatagacct 33772522  T
Q  100 tcaagatataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggt 199  Q
    |||| ||||| ||||  | |||||||| ||||||||||||||||| |||||||||||||| ||    || ||||||| ||||||||||||||||||||||    
T  33772521 tcaaaatatacacacaaacccatgtttgcatgctgaggtacttgacaagattcgaagtgcttgtcgtgaatggggatgttttcaagtgattaatcatggt 33772422  T
Q  200 attccagttagtgttttggatgagatgattagt 232  Q
    ||||||| ||| |||||||||||||||||||||    
T  33772421 attccagatagcgttttggatgagatgattagt 33772389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 33764413 - 33764252
Alignment:
Q  66 catcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaa 165  Q
    ||||||| |||||  ||||||| ||||| |||||||||||||| |||||| |||||||||| |||| ||||||| |||| || ||||| |||||||||||    
T  33764413 catcttcaaagttgtgtgtccccatcattgaccttcaagatatgaacactaatccatgtttgcatgttgaggtagttgacaaaattcgtagtgcatgcaa 33764314  T
Q  166 ggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatga 227  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  33764313 ggagtggggatttttccaagtgattaatcatggtattccggttagtgttttggatgagatga 33764252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 8349194 - 8349267
Alignment:
Q  149 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatga 222  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||  ||| ||| ||||||||    
T  8349194 attcgaactgcatgcaaggagtggggattttttaaagtgattaatcatggaattcccattaatgtattggatga 8349267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 41238474 - 41238532
Alignment:
Q  170 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 228  Q
    ||||||||||| |||||||| ||||||||||||||| ||  ||||||||||||||||||    
T  41238474 tggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgat 41238532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 49465331 - 49465283
Alignment:
Q  149 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatg 197  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  49465331 attcgaagtgcatgccatgagtggggattttttcaggtgattaatcatg 49465283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 25224936 - 25224872
Alignment:
Q  158 gcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatga 222  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||||||||    
T  25224936 gcatgcaaggagtagggattttttcaagtgattaatcatggaattccaattaatgtattggatga 25224872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 26168446 - 26168492
Alignment:
Q  158 gcatgcaaggagtggggattttttcaagtgattaatcatggtattcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  26168446 gcatgcaaggagtggggattttttcaagtgattaatcatggaattcc 26168492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 26396048 - 26396121
Alignment:
Q  149 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatga 222  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||  || |||| ||||||||    
T  26396048 attcgaactgcatgtaaggagtggggattttttcaagtgattaatcatgaaattcccatttgtgtattggatga 26396121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 15688492 - 15688431
Alignment:
Q  168 agtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgatt 229  Q
    |||||||||| ||||||||| | || ||||||||||||  || |||||||||||| ||||||    
T  15688492 agtggggattctttcaagtggtcaaccatggtattccatctactgttttggatgaaatgatt 15688431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 1093114 - 1093194
Alignment:
Q  149 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgatt 229  Q
    |||| |||||||||| | |||||||||||||||||  | ||||||||||  |||||  ||| ||| |||||||| ||||||    
T  1093114 attcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgatt 1093194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 29462850 - 29462930
Alignment:
Q  149 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgatt 229  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||  |||||  ||| ||| |||||||| ||||||    
T  29462850 attcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcctattattgtcttggatgaaatgatt 29462930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 19844605 - 19844685
Alignment:
Q  149 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgatt 229  Q
    ||||||||||||||  | ||||||||||||||||| |||||||||||||  |||||  | | ||| |||||||||||||||    
T  19844605 attcgaagtgcatgtcatgagtggggattttttcaggtgattaatcatgaaattcccatcaatgtattggatgagatgatt 19844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 19877617 - 19877567
Alignment:
Q  147 agattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatg 197  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||||||||    
T  19877617 agattcaaagagcctgcaatgagtggggattttttcaagtgattaatcatg 19877567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 28642254 - 28642196
Alignment:
Q  170 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 228  Q
    |||||||| |||||||| || |||||||| |||||||||  ||||||||||||||||||    
T  28642254 tggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat 28642196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 28691459 - 28691399
Alignment:
Q  168 agtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 228  Q
    |||||||||| |||||||| || |||||||| ||| ||| |  ||||||||||||||||||    
T  28691459 agtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgat 28691399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University