View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_high_7 (Length: 443)
Name: NF18322_high_7
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 15066032 - 15065767
Alignment:
| Q |
17 |
atgaacatgatgtttaacgacgactacgatcaaataaaataacatggaataacatcatgtgtattgttcaaggccaacaa-gccttagccttaggcactc |
115 |
Q |
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| T |
15066032 |
atgaacatgatgtttaacgacgactacgatcaaataaaataacatagaataacatcatgtgtatagttcaaggccaacaaagccttagccttaggcaccc |
15065933 |
T |
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| Q |
116 |
atatagttttttcaatctttatgaggtgaggtgttatttgttggtgatgagaatgtgagtttttgttgctacgggtggcaacgagtgtaatggagtgact |
215 |
Q |
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| T |
15065932 |
atatagttttttcaatctttatgaggtgaggtgttatttgt-ggtgatgagaatgtgagtttttgttactacgggtggcaacgagtgtaatggagtgact |
15065834 |
T |
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| Q |
216 |
ttggtttgagtagcggacgatagctgtttgaattttgttaatgtggttatttacgatagagtgtaag |
282 |
Q |
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| T |
15065833 |
ttggtgtgagtagcggacgataactgtttgaattttgttaatgtggttatttaagatagagtgtaag |
15065767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 15075274 - 15075064
Alignment:
| Q |
72 |
catgtgtattgttcaaggccaacaa-gccttagccttaggcactcatatagttttttcaatctttatgaggtgaggtgttatttgttggtgatgagaatg |
170 |
Q |
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| T |
15075274 |
catgtgtatagtgcaaggccaacaaagccttagccttaggcgcccatatagttttttcaatctttatgaggtgaggtgttgtttat-ggtgatgagaatg |
15075176 |
T |
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| Q |
171 |
tgagtttttgttgctacgggtggcaacgagtgtaatggagtgactttggtttgagtagcggacgatagctgtttgaattttgttaatgtggttatttacg |
270 |
Q |
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| T |
15075175 |
tgagttgttgttgccacgggtggcaacgagtgtaatggagtggctttggtgtgagtagcggacgatagctgtttgaattttgtttatgtggttatttacg |
15075076 |
T |
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| Q |
271 |
atagagtgtaag |
282 |
Q |
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| T |
15075075 |
atagagtgtaag |
15075064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 15075934 - 15075871
Alignment:
| Q |
17 |
atgaacatgatgtttaacgacgactacgatcaaataaaataacatggaataacatcatgtgtat |
80 |
Q |
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| T |
15075934 |
atgaacatgatgtttaacgactactacgatcaaataaaataacatggaataacatcatgtgtat |
15075871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 28006835 - 28006888
Alignment:
| Q |
208 |
gagtgactttggtttgagtagcggacgatagctgtttgaattttgttaatgtgg |
261 |
Q |
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| T |
28006835 |
gagtggctttggtgtgagtagcgggtgataggtgtttgaattttgtttatgtgg |
28006888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 15840771 - 15840723
Alignment:
| Q |
206 |
tggagtgactttggtttgagtagcggacgatagctgtttgaattttgtt |
254 |
Q |
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| T |
15840771 |
tggagtgactttggtatgagtaacgaacgatagatgtttggattttgtt |
15840723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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