View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_high_8 (Length: 436)
Name: NF18322_high_8
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 42468030 - 42467643
Alignment:
| Q |
1 |
atagaaaactcgctataagaataagatgccatgatttaaccaactttactgattcaaaagaaaaacaaaataatgagacaaaattactttattatatgaa |
100 |
Q |
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| T |
42468030 |
atagaaaactcgctataagaataagatgccatgatttaaccaactttactgattcaaaagaaaaacaaaataatgagacaaaattactttattatatgaa |
42467931 |
T |
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| Q |
101 |
ggttgtgcggaggaaattcgattcccaaacagttagaaaagtctataaatacttgtaattgtatcacttgtattcattcattcacttttcataatcaata |
200 |
Q |
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| T |
42467930 |
ggttgtgtggaggaaattcgattcccaaacagttagaaaagtctataaatacttgtaattgtatcacttgtattcattaattcacttttcataatcaata |
42467831 |
T |
|
| Q |
201 |
caattcactcgtt---------------------acatcttgcacaaacaaatttgtatctctatcctttggcttatgcgtgtagatcaggacacaggtc |
279 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42467830 |
caattcactcgttctctcttagagtgcaagaaacacatcttgcacaaacaaatttgtatctctatcctttggtttatgcgtgtagatcaggacacaggtc |
42467731 |
T |
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| Q |
280 |
ctgggttttcaaattctattatcagccaagtaaagatgactggcggtaatggtctcctcaacacactcccaattcttgatagcaagaa |
367 |
Q |
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| T |
42467730 |
ctgggttttcaaattctattatcagccaagtaaagatgactggcggtaatggtctcctcaacacactcccaattcttgctatcaagaa |
42467643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 49100111 - 49100222
Alignment:
| Q |
21 |
ataagatgccatgatttaaccaactttactgattcaaaagaaaaacaaaataatgagacaaaattactttattatatgaaggttgtgcggaggaaattcg |
120 |
Q |
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| T |
49100111 |
ataagatgccatgatttaaccaactttagtgattcaaaaggaaaacaaaataatgagactaaattgctttattatttgatggttgtggggagcaaaatca |
49100210 |
T |
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| Q |
121 |
attcccaaacag |
132 |
Q |
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| T |
49100211 |
attcccaaacag |
49100222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 1351820 - 1351743
Alignment:
| Q |
133 |
ttagaaaagtctataaatacttgtaattgtatcacttgtattcattcattcacttttcataatcaatacaattcactc |
210 |
Q |
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| T |
1351820 |
ttagaaaagtctttaaatacttgtaattgtatcccatgtattcattcattcagttttcataatcaatataattcactc |
1351743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 27126314 - 27126224
Alignment:
| Q |
325 |
gtaatggtctcctcaacacactcccaattcttgatagcaagaattgggaaagatggcataaacagatgaaagcactctttggttatcaaga |
415 |
Q |
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|||||||||||| ||| ||| || || |||||||| ||||||||||||||||| |||||||| |||||||||| || ||||| | |||||| |
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| T |
27126314 |
gtaatggtctccccaatacattctcagttcttgatggcaagaattgggaaagacggcataaagagatgaaagctctatttggctttcaaga |
27126224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 30117266 - 30117309
Alignment:
| Q |
345 |
ctcccaattcttgatagcaagaattgggaaagatggcataaaca |
388 |
Q |
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|||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
30117266 |
ctcccaattcctgatagcaagaattgggatagatggcacaaaca |
30117309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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