View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18322_low_12 (Length: 394)

Name: NF18322_low_12
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18322_low_12
NF18322_low_12
[»] chr3 (4 HSPs)
chr3 (42-364)||(50301704-50302045)
chr3 (179-252)||(10773485-10773558)
chr3 (179-252)||(32862071-32862144)
chr3 (179-252)||(4317467-4317540)
[»] chr4 (7 HSPs)
chr4 (179-252)||(39264737-39264810)
chr4 (179-252)||(2737723-2737796)
chr4 (179-252)||(48997058-48997131)
chr4 (179-251)||(38372657-38372729)
chr4 (179-252)||(16041378-16041451)
chr4 (143-252)||(45065544-45065654)
chr4 (179-252)||(12391334-12391407)
[»] chr2 (6 HSPs)
chr2 (292-384)||(23757861-23757951)
chr2 (179-252)||(23757712-23757785)
chr2 (327-384)||(33522523-33522580)
chr2 (168-226)||(12197420-12197478)
chr2 (204-249)||(33522370-33522415)
chr2 (256-290)||(23757801-23757835)
[»] chr1 (2 HSPs)
chr1 (179-249)||(3324902-3324972)
chr1 (179-252)||(48315108-48315181)
[»] chr6 (1 HSPs)
chr6 (135-259)||(23112034-23112164)
[»] chr5 (2 HSPs)
chr5 (170-252)||(37344574-37344656)
chr5 (291-356)||(37344692-37344757)
[»] chr8 (4 HSPs)
chr8 (327-384)||(42476361-42476418)
chr8 (179-249)||(28733228-28733298)
chr8 (204-247)||(42476528-42476571)
chr8 (179-251)||(10227238-10227309)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 42 - 364
Target Start/End: Original strand, 50301704 - 50302045
Alignment:
Q  42 ctcttaactattgttggtattattttactctcatgatcaattttcgatc-gtttg---------agttcatctttgttatattccacaacttagtcactt 131  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||| ||| |||||         ||||||||||||||||| ||||||||||||||||||    
T  50301704 ctcttaactattgtttgtatcattttactctcataatcaattttcaatccgtttgtgtatgttaagttcatctttgttatactccacaacttagtcactt 50301803  T
Q  132 ccgtttagaggtgggcaaaaatattcaaaaactaaac-----aaatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttatttt 226  Q
    |||||||||||||||||||||||| | |||| || ||     ||||| ||| ||||||||| |||||||||||||| ||||||||| ||||| |||||||    
T  50301804 ccgtttagaggtgggcaaaaatatcctaaaagtagacgaacaaaatcaaactaaaattaactgaaccattacattggttattgatccgaaccattatttt 50301903  T
Q  227 aaaaacaattcattaactgaaccgaatcgaaccaaacttaattaactaaactgaaccattacattttctcacacaaaaattcattttcacac----nnnn 322  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||            
T  50301904 aaaaacagttcattaactgaaccaaaccgaaccaaacttaattaactaaaccgaaccattacattttctcacacaaaaattcattttcacacaaaaaaaa 50302003  T
Q  323 nnnncccttttctaaaccctaatttcatttcaatttcgatcc 364  Q
        ||||||||||||||||||||||||||||||||| ||||    
T  50302004 aaaacccttttctaaaccctaatttcatttcaatttctatcc 50302045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 10773485 - 10773558
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||| ||||||||  |||||||||||| | |||||||||||||||||||  |  |||||||||||||||    
T  10773485 aaaattaactgaaccattttattgattattgaaccgaaccgttattttaaaaacggtcaattaactgaaccgaa 10773558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 32862071 - 32862144
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||| ||| |||| ||||  ||||||| |  |||||||||||||||||||||||| |||||||||||||    
T  32862071 aaaattaactgaatcattgcattatttattgaaccaaaccgttattttaaaaacaattcactaactgaaccgaa 32862144  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 4317540 - 4317467
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||||||||| ||| | ||  |||||| |||||||| |||||| || ||| ||||||||||||| ||||    
T  4317540 aaaattaaccgaacctttatagtggatattgaactgaaccgctattttgaagacagttcattaactgaatcgaa 4317467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 39264737 - 39264810
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  39264737 aaaattaaccgaaccattacattggttattgaactgaaccattattttaaaaacagttcattaactgaaccgaa 39264810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 2737796 - 2737723
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  2737796 aaaattaactgaaccattacattggttattgaaccgaaccgttattttaaaaacaaatcattaactgaaccgaa 2737723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 48997131 - 48997058
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    |||||||||||||||| ||||||| ||||| | |  ||||||||||||||||||| ||||||||||||| ||||    
T  48997131 aaaattaaccgaaccactacattggttattaaaccaaaccgttattttaaaaacagttcattaactgaatcgaa 48997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 38372729 - 38372657
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccga 251  Q
    ||||||||| |||| ||| ||||| ||||||| | |||| ||||||||||||||| |||||||||||||||||    
T  38372729 aaaattaactgaactattgcattggttattgaaccgaacagttattttaaaaacagttcattaactgaaccga 38372657  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 16041378 - 16041451
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||||||||| ||| ||||  |||||| |||||||| |||||| || ||| ||||||||||||||||||    
T  16041378 aaaattaaccgaacctttatattggatattgaactgaaccgctattttgaagacagttcattaactgaaccgaa 16041451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 45065544 - 45065654
Alignment:
Q  143 tgggcaaaaatattcaaaaactaaaca-aatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcatta 241  Q
    ||||||||||||| |||||||  |||  || | ||| ||||||| | ||| |||||||||| |||||||   ||  |||||||||||||||| |||||||    
T  45065544 tgggcaaaaatatccaaaaaccgaaccgaaccaaactaaaattagctgaatcattacattggttattgaatcgagtcgttattttaaaaacagttcatta 45065643  T
Q  242 actgaaccgaa 252  Q
    |||||| ||||    
T  45065644 actgaatcgaa 45065654  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 12391407 - 12391334
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||||||||| ||| ||||  |||||| |||||||| |||||| | | || ||||||||| ||||||||    
T  12391407 aaaattaaccgaacctttatattggatattgaactgaaccgctattttgagaccagttcattaaccgaaccgaa 12391334  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 23757861 - 23757951
Alignment:
Q  292 ttctcacacaaaaattcattttcacacnnnnnnnncccttttctaaaccctaatttcatttcaatttcgatccaatccaactcttcttctctg 384  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  23757861 ttctcacacaaaaattcattttcacacaaaaaa--cccttttctaaaccctaatttcatttcaatttcaatctaatccacctcttcttctctg 23757951  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 23757712 - 23757785
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||  |||||||||||||| ||||||| | || |||||||||||| ||||||| |||||||||||||||    
T  23757712 aaaattaattgaaccattacattggttattgaaccgatccgttattttaagaacaatttattaactgaaccgaa 23757785  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 33522523 - 33522580
Alignment:
Q  327 cccttttctaaaccctaatttcatttcaatttcgatccaatccaactcttcttctctg 384  Q
    ||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||||    
T  33522523 cccttttctaaaccctactttcatttcaatttcaatccaattcacctcttcttctctg 33522580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 12197420 - 12197478
Alignment:
Q  168 caaatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttatttt 226  Q
    |||| ||||||||||||||||||||||||||| || ||||||| | |||||||||||||    
T  12197420 caaaccgaaccaaaattaaccgaaccattacactggttattgaaccgaaccgttatttt 12197478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 33522370 - 33522415
Alignment:
Q  204 ttattgatctgaaccgttattttaaaaacaattcattaactgaacc 249  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  33522370 ttattgaactgaaccgttattttaaaaacaattcactaactaaacc 33522415  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 23757801 - 23757835
Alignment:
Q  256 aaccaaacttaattaactaaactgaaccattacat 290  Q
    |||||||||||||||||||||| ||||||||||||    
T  23757801 aaccaaacttaattaactaaaccgaaccattacat 23757835  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 3324972 - 3324902
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaacc 249  Q
    ||||||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||    
T  3324972 aaaattaactgaaccattacattggttattaaaccgaaccgttattttaaaaacaattcattaactgaacc 3324902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 48315181 - 48315108
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    ||||||||| |||||||||||||||||||| |   |||| ||||||||||||||| ||||||||||||||||||    
T  48315181 aaaattaactgaaccattacattgattattaaatcgaacagttattttaaaaacagttcattaactgaaccgaa 48315108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 23112164 - 23112034
Alignment:
Q  135 tttagaggtgggcaaaaatattcaaaaactaaaca-aatcgaaccaaa-----attaaccgaaccattacattgattattgatctgaaccgttattttaa 228  Q
    ||||||||||||||||||||| |||||||| |||  || |||||||||     |||||   |||||||||| || ||||||| | |||||||||||||||    
T  23112164 tttagaggtgggcaaaaatatccaaaaactgaaccgaaccgaaccaaacgaaaattaattaaaccattacagtggttattgaaccgaaccgttattttaa 23112065  T
Q  229 aaacaattcattaactgaaccgaatcgaacc 259  Q
    ||||| |||||||| ||||||||| ||||||    
T  23112064 aaacagttcattaattgaaccgaaccgaacc 23112034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 37344574 - 37344656
Alignment:
Q  170 aatcgaaccaaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccgaa 252  Q
    |||| ||| ||||||||| ||| |||||||||| ||||||| | |||||||||||||||||||| ||||||||| ||||||||    
T  37344574 aatcaaactaaaattaactgaatcattacattggttattgaaccgaaccgttattttaaaaacagttcattaaccgaaccgaa 37344656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 37344692 - 37344757
Alignment:
Q  291 tttctcacacaaaaattcattttcacacnnnnnnnncccttttctaaaccctaatttcatttcaat 356  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  37344692 tttctcacacaaaaattcattttcacacaaaaagaacccttttctaaaccctaatttcatttcaat 37344757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 42476418 - 42476361
Alignment:
Q  327 cccttttctaaaccctaatttcatttcaatttcgatccaatccaactcttcttctctg 384  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  42476418 cccttttctaaaccctaatttcatttcaatttcaatccaattcacctcttcttctctg 42476361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 28733228 - 28733298
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaacc 249  Q
    ||||||||| ||| |||||||||| ||||| | | |||||||||||||||||||| |||||||||||||||    
T  28733228 aaaattaactgaatcattacattggttattaaacagaaccgttattttaaaaacagttcattaactgaacc 28733298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 42476571 - 42476528
Alignment:
Q  204 ttattgatctgaaccgttattttaaaaacaattcattaactgaa 247  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  42476571 ttattgaactgaaccgttattttaaaaacaattcactaactgaa 42476528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 10227309 - 10227238
Alignment:
Q  179 aaaattaaccgaaccattacattgattattgatctgaaccgttattttaaaaacaattcattaactgaaccga 251  Q
    ||||||||| |||||||||||||| ||||||| | |||||||| ||||||||| | ||||| ||||| |||||    
T  10227309 aaaattaactgaaccattacattggttattgaaccgaaccgtt-ttttaaaaaaagttcatcaactgtaccga 10227238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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