View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_13 (Length: 392)
Name: NF18322_low_13
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 7173361 - 7173726
Alignment:
| Q |
12 |
gaaatgaaaaagaattaatcttttcaagcaaatcaactgctactcataagataaatgtgaataaatattcatttgaataaaatcagtgtagcctattgaa |
111 |
Q |
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| T |
7173361 |
gaaatgaaaaagaattaatcttttcaagcaaatcaactgctactcataagataaatgtgaataaatattcatttgaataaaatcagtgtaggctattgaa |
7173460 |
T |
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| Q |
112 |
actagcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaactaaatccagcttaagcatagaaaacaacgataaaatagtcaaata |
211 |
Q |
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| T |
7173461 |
actagcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaactaaatccagcttaagcatagaaaacaacgataaaatagtcaaata |
7173560 |
T |
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| Q |
212 |
acagc--nnnnnnnntcagtgagaaagagagaaaacatattactgttatgatggtggggaacaatgtagaatagtgtagaattacaattctttgcatttg |
309 |
Q |
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| T |
7173561 |
acagcaaaagaaaaatcagtgagaaagagagaaaacatattactgttatgatggtggggaacaatgtagaatagtgtagaattacaattctttgcatttg |
7173660 |
T |
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| Q |
310 |
acagaaatagccactctaactgtagttcaagaaactttgtcttcatgttgcttcagacatcccaac |
375 |
Q |
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| T |
7173661 |
acagaaatagccactctaactgtagttcaagaaactttgtcttcatgttgcttcagacatcccaac |
7173726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 7166914 - 7166995
Alignment:
| Q |
239 |
agaaaacatattactgttatgatggtgg-ggaacaatgtagaatagtgtagaattacaattctttgcatttgacagaaatag |
319 |
Q |
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| T |
7166914 |
agaaaacatattgctattaggatggtgcaggaacaatgtagagcagtctagaatcacaattcttttcatttgacagaaatag |
7166995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 7167915 - 7168051
Alignment:
| Q |
69 |
tgaataaatattcatttgaataaaat--cagtgtagcctattgaaactagcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaac |
166 |
Q |
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| T |
7167915 |
tgaataaatattcatttgaataaaattacattgttggctattgaacctggcacttcctcgtaaaggattcaaagtcagaacgaaagcgccattaaataat |
7168014 |
T |
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| Q |
167 |
taaatccagcttaagcatagaaaacaacgataaaata |
203 |
Q |
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| T |
7168015 |
gaaatccaacttaagtatagaaaacagtgataaaata |
7168051 |
T |
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