View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_14 (Length: 384)
Name: NF18322_low_14
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 36938109 - 36938459
Alignment:
| Q |
20 |
aagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactat |
119 |
Q |
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| T |
36938109 |
aagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactat |
36938208 |
T |
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| Q |
120 |
caacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatggaagtggtattggt |
219 |
Q |
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| T |
36938209 |
caacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatggaagtggtattggt |
36938308 |
T |
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| Q |
220 |
ctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacat |
319 |
Q |
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| T |
36938309 |
ctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacat |
36938408 |
T |
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| Q |
320 |
atgatcatgtggggattgatgttaattcaatcagtacttcttacacaaccc |
370 |
Q |
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| T |
36938409 |
atgatcatgtggggattgatgttaattcaatcagtacttcttacacaaccc |
36938459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 36948356 - 36948686
Alignment:
| Q |
20 |
aagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactat |
119 |
Q |
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||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
36948356 |
aagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacattaacacaagtgaagtcacagatttcactactcgtttctcattttctat |
36948455 |
T |
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| Q |
120 |
caacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttcc-aagagatggaagtggtattgg |
218 |
Q |
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| T |
36948456 |
caacacccccaacaaaagttatcatggagatggcatcaccttctatttggcacgccccaattttc--cta--tgtcccaaatagatggaagtggtatcgg |
36948551 |
T |
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| Q |
219 |
tctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctaca |
318 |
Q |
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||| |||| | |||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| | |
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| T |
36948552 |
tctagcgagccgtgttcaattgagtaatccaaattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgactgggatcctaaa |
36948651 |
T |
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| Q |
319 |
tatgatcatgtggggattgatgttaattcaatcag |
353 |
Q |
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| T |
36948652 |
tatgatcatgttgggattgatgttaattctatcag |
36948686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 353
Target Start/End: Original strand, 36958493 - 36958820
Alignment:
| Q |
23 |
acagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaa |
122 |
Q |
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|||||||||| |||||||||||||||||| | |||||||||||| ||||||| || || |||||||| ||||| | |||||||||||||||||||||||| |
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| T |
36958493 |
acagtctaggcagagtcacatattcaaaattgtttcatctttgggacataaaaacaagcgaagtcacagatttcaatactcgtttctcatttactatcaa |
36958592 |
T |
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| Q |
123 |
caccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttcc-aagagatggaagtggtattggtct |
221 |
Q |
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||||| |||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||| | ||| || || | ||||| | || || ||||| |
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| T |
36958593 |
cacccccaacaaaacccatcatgcagatggcatgaccttctatttggcacaccccaattttcc----catgtcccaaatatatggaggcggaatcggtct |
36958688 |
T |
|
| Q |
222 |
catgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatat |
321 |
Q |
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|||| |||||||| || |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |
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| T |
36958689 |
tgcgagccttgttcaattgagtaatccagattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgaatgggatcctaactat |
36958788 |
T |
|
| Q |
322 |
gatcatgtggggattgatgttaattcaatcag |
353 |
Q |
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|||||||| ||||||||||||||||| ||||| |
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| T |
36958789 |
gatcatgttgggattgatgttaattctatcag |
36958820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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