View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_18 (Length: 312)
Name: NF18322_low_18
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 97 - 305
Target Start/End: Original strand, 37951205 - 37951415
Alignment:
| Q |
97 |
tataatctacttatctatatccatttcttctcaaaacatctatgcattaagagcagtagcttc---atactaagtatgatcaacttatcataatatgttc |
193 |
Q |
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| T |
37951205 |
tataatctacttatctatatccatttcttctcaaa-catctatgcattgagagcagtagcttcttcatactaagtatgatcaacttatcataatatgttc |
37951303 |
T |
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| Q |
194 |
attnnnnnnnnctcatatacataacataatgcgatacttcgtcatttaaaattcaggttcacacttcaatacaatatatcctactgttatacaaatatct |
293 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37951304 |
attaaaaaaaactcatatacataacataatgcgatacttcgtcatttaaaattcagtttcacacttcaatacaatatatcctactgttatacaaatatct |
37951403 |
T |
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| Q |
294 |
aacatattcttc |
305 |
Q |
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|||||||||||| |
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| T |
37951404 |
aacatattcttc |
37951415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 37950865 - 37950946
Alignment:
| Q |
17 |
aaaacatccattatatacatttctttatctatttacaataattcataatgttgtaattaaagcctcaatctgacattagata |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
37950865 |
aaaacatccattatatacatttctttatctatttacaataattcataatgctgtaattaaagtctcaatctaacattagata |
37950946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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