View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18322_low_19 (Length: 308)
Name: NF18322_low_19
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 46 - 290
Target Start/End: Original strand, 3423399 - 3423643
Alignment:
| Q |
46 |
agctcctccaccgccaatgctacgtggaagcggaggatctgcgccaccgccacctccacttggagcagggagatcattaagggctagagctactacaaaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3423399 |
agctcctccaccgccaatgctacgtggaaacggaggatctgcaccaccgccacctccacttggagcagggagatcattaagggctagagctactacaaaa |
3423498 |
T |
|
| Q |
146 |
ctgaaaagatcagcacaattaggaaacctttatagaactctcaagggaaaagtagaagggtctagccttaaaggaaaatcgtctagtgggagaaacactg |
245 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3423499 |
ctgaaaagatcaacacaattaggaaacctttatagaactctcaagggaaaagtagaagggtctagccttaaaggaaaatcgtctagtgggagaaacactg |
3423598 |
T |
|
| Q |
246 |
caattggagcaaaaaacaccggtggaaaacaaggaatggctgatg |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3423599 |
caattggagcaaaaaacaccggtggaaaacaaggaatggctgatg |
3423643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 11917788 - 11917752
Alignment:
| Q |
254 |
gcaaaaaacaccggtggaaaacaaggaatggctgatg |
290 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11917788 |
gcaaaaagcaccggtggaaaacaaggaatggctgatg |
11917752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University