View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_22 (Length: 291)
Name: NF18322_low_22
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 55445781 - 55445498
Alignment:
| Q |
1 |
cgcttgcactgcatgctgtaaacaaaacttgacggaaaaatctacaaatgcatcagatcctgcaagtattgtaatggagcaagatgagtctcagtccatt |
100 |
Q |
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| T |
55445781 |
cgcttgcactgcatgctgtaaacaaaacttgacggaaaaatctacaaatgtatcagatcctgcaagtattgtaatggagcaagatgagtctcagtccatc |
55445682 |
T |
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| Q |
101 |
ataaattcaaattatgcaagattagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtag |
200 |
Q |
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| T |
55445681 |
ataaattcaaattatgcaagattagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtag |
55445582 |
T |
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| Q |
201 |
tagatcaaaaaatactaaactctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatg |
284 |
Q |
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| T |
55445581 |
tagatcaaaatatactaaactctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatg |
55445498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 55470591 - 55470626
Alignment:
| Q |
249 |
taaatcttcctaggccttggatgaactttacctatg |
284 |
Q |
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| T |
55470591 |
taaatcttcctaggccttggttgaactttacctatg |
55470626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 33516277 - 33516057
Alignment:
| Q |
45 |
caaatgcatcagatcctgcaagtattgtaatggagcaagatgagtctcagtccattataaattcaaattatgcaagattagggtcgtcgcaaaaggctct |
144 |
Q |
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| T |
33516277 |
caaatgcatcagatcctgcaagtattgaaatgaaccaagatgagcctcaatccatcatcgattcaaaatatacaagattaggatcgtcgcagaaggctat |
33516178 |
T |
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| Q |
145 |
agtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaaaatactaaactctctttttgagcaagagcaacaa |
244 |
Q |
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| || || |||||||||| | |||||||||||||||||| |||||||||||| | |||| | |||||||| ||||||||| |||||||||| ||| |
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| T |
33516177 |
aaaattgtgcaatgacataagctctgggatggaatcaactcctgtgatttgtgtaatggatctacaaatactagactctctttgtgagcaagag---caa |
33516081 |
T |
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| Q |
245 |
tatataaatcttcctaggccttgg |
268 |
Q |
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||| ||||||||| ||| |||||| |
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| T |
33516080 |
tatttaaatcttcatagaccttgg |
33516057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 271
Target Start/End: Complemental strand, 33499519 - 33499373
Alignment:
| Q |
122 |
ttagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaaaatactaaact |
221 |
Q |
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||||||||||||||||||||| | ||||||||| | ||||||| | || || ||||||||||| ||||| ||||||||||||||| |||||||| | |
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| T |
33499519 |
ttagggtcgtcgcaaaaggctatggtgttatgtaagaacataagctttgcgacggaatcaactcttgtgatatgtgtagtagatcaacaaatactagatg |
33499420 |
T |
|
| Q |
222 |
ctctttttgagcaagagcaacaatatataaatcttcctaggccttggatg |
271 |
Q |
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||||||||||||||| | |||||| |||||||||||| ||||| |||| |
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| T |
33499419 |
ctctttttgagcaag---atcaatatgtaaatcttcctaagccttagatg |
33499373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 33487920 - 33487802
Alignment:
| Q |
121 |
attagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaaaatactaaac |
220 |
Q |
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|||||||||||||| ||||| | |||||||||| |||||||||| | || | |||||||||||| ||||| ||||||||||||| | || ||||||| |
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| T |
33487920 |
attagggtcgtcgcgaaaggttatagtgttatgcaatgacataagctttgcggcggaatcaactcctgtgatatgtgtagtagatctacaagtactaaat |
33487821 |
T |
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| Q |
221 |
tctctttttgagcaagagc |
239 |
Q |
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| ||||| ||||||||||| |
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| T |
33487820 |
tatctttgtgagcaagagc |
33487802 |
T |
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