View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_25 (Length: 262)
Name: NF18322_low_25
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 55445800 - 55446046
Alignment:
| Q |
1 |
ttattaggctgatctttggtcttctgaatatcggaagagaaaatatttgcaacttctaagcattggggctgctgcatagatgtttcccccatctcatttc |
100 |
Q |
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| T |
55445800 |
ttattaggctgatctttggtcttctgaatatcggaagagaaaatatttgcaacttctaagcattggggctgctgcatagatgtttcccccatctcatttc |
55445899 |
T |
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| Q |
101 |
ctttcccagtcacttccagagaagcatcaccggtagacaaacttagttgcttaggagattttgaaagcttaagttcggcagggtgaactgacttaacatg |
200 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55445900 |
cttttccagtcacttccagagaaacatcaccggtagacaaacttagttgcttaggagattttgaaagcttaagttcggcagggtgaactgacttaacatg |
55445999 |
T |
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| Q |
201 |
caaccataattcctccatatttccaaaatattcaccacaaggaatac |
247 |
Q |
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| T |
55446000 |
caaccataattcctccatatttccaaaatattcaccacaaggaatac |
55446046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 55470564 - 55470475
Alignment:
| Q |
158 |
attttgaaagcttaagttcggcagggtgaactgacttaacatgcaaccataattcctccatatttccaaaatattcaccacaaggaatac |
247 |
Q |
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| T |
55470564 |
attttgaaagcttaagttcggcagggtgaactgacttaacatgcaaccataatttctccatagttccaaactgatcaccacaaggaatac |
55470475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 33500148 - 33500279
Alignment:
| Q |
119 |
gagaagcatcaccggtagacaaacttagttgcttaggagattttgaaag---cttaagttcggcagggtgaactgacttaacatgcaaccataattcctc |
215 |
Q |
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| T |
33500148 |
gagaatcatcaccggtagacaacattagttgctcaggagttttcgaaagtagctcaaattcgacagggtgaactgacttaacatgcaaccataattcctc |
33500247 |
T |
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| Q |
216 |
catatttccaaaatattcaccacaaggaatac |
247 |
Q |
| |
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|||||||||||||| |||||||||||||| |
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| T |
33500248 |
catatttccaaaatgacaaccacaaggaatac |
33500279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 33516972 - 33517087
Alignment:
| Q |
132 |
ggtagacaaacttagttgcttaggagattttgaaagcttaagttcggcagggtgaactgacttaacatgcaaccataattcctccatatttccaaaatat |
231 |
Q |
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||||| |||| |||||| || || || |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33516972 |
ggtaggcaaagttagttcctcagaagcttttgaaagcttaaattcgactgggtgaactgacttaacatgcaaccataattcctccatatttccaaaatga |
33517071 |
T |
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| Q |
232 |
tcaccacaaggaatac |
247 |
Q |
| |
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|||||||||||||| |
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| T |
33517072 |
ctaccacaaggaatac |
33517087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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