View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_28 (Length: 245)
Name: NF18322_low_28
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 55445495 - 55445255
Alignment:
| Q |
1 |
acaaaaccgatgcttggtccatcgtctagtcttgaat---atgaggtattttaattttacttgatttttatttcatcaaactctaattatataagagtaa |
97 |
Q |
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| T |
55445495 |
acaaaaccgatgcttggtgcatcgtctcgtcttgatttttatgaggtattttacttttacttgatttttatttcatcaaactctaatcatataagagtaa |
55445396 |
T |
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| Q |
98 |
attcgagtatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaaattggaacaaattcttcaagaactcacaagcataca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55445395 |
attcgagtatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaaattggaacaaattcttcaagaactcacaagcataca |
55445296 |
T |
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| Q |
198 |
ctatatagccttatagnnnnnnnctaacaatatttaacctatg |
240 |
Q |
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| T |
55445295 |
c--tatagccttatagtttttttctaacaatatttaacctatg |
55445255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 55470629 - 55470791
Alignment:
| Q |
1 |
acaaaaccgatgcttggtccatcgtctagtcttgaatatgaggtattttaattttacttgatttttatttcatcaaactctaattatataagagtaaa-t |
99 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||| ||||| ||||||| | |
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| T |
55470629 |
acaaaaccgatgcttcgtccatcgtctggtcttgaatatgaggtatttaacttttacttgttttttatttgatcaaactctaatcatataggagtaaatt |
55470728 |
T |
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| Q |
100 |
tcgagtatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaaa |
162 |
Q |
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| T |
55470729 |
tcgattataataaaataaatgttttttatttcacttataattgtgtttaataaagaagctaaa |
55470791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 33516038 - 33515853
Alignment:
| Q |
1 |
acaaaaccgatgcttggtccatcgtctagtcttgaatatgaggtattttaattttacttgatttttatttcatcaaactctaattatataagagtaaat- |
99 |
Q |
| |
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|||||||||||| |||||| || | | |||||||| |||||||||||| | ||| |||| |||||||||| || || || ||| ||||| |||||||| |
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| T |
33516038 |
acaaaaccgatgtttggtcgattgccaagtcttgactatgaggtatttaattttgactttatttttatttgataaagct--aatcatataggagtaaatg |
33515941 |
T |
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| Q |
100 |
tcgagtatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaaattggaacaaattcttcaagaactca |
187 |
Q |
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|| ||||| |||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
33515940 |
tctagtatactaaactaaatgtttcttatttcacttataattgtgtttaagaaataagctaaattggaccaaattcttcaagaactca |
33515853 |
T |
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