View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18322_low_3 (Length: 524)
Name: NF18322_low_3
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Complemental strand, 54376751 - 54376251
Alignment:
| Q |
8 |
gagatgaagagtaacaatgttggtacgtggttagagagagaatcgaacgccacgatctcttctgaaatctcaacattctctcatttttcgtttgaatttt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54376751 |
gagaagaagagtaacaatgttggtacgtggttagagagagaatcgaacgccacgatctcttctgaaatctcaacattctctcatttttcgtttgaatttt |
54376652 |
T |
|
| Q |
108 |
caccctaattcgtgatggaagcgttgatcgaattatgcgacctcattgcacaaaatccatcgcaattctcggataaactctcgtggatttgcgataaatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54376651 |
caccctaattcgtgatggaagcgttgatcgaattatgcgacctcattgcacaaaatccatcgcaattctccgataaactctcgtggatttgcgataaatg |
54376552 |
T |
|
| Q |
208 |
tccaccgccggagtatctctccgccggatcgcctagggtttcacgttctcagctcaatgccgttaccgccgtcgctcgtttcttatctaactgcgtagat |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54376551 |
tccaccgccggagtatctttccgccggatcgcctagggtttcacgttctcagctcaatgccgttaccgccgtcgctcgtttcttatctaactgcgtagat |
54376452 |
T |
|
| Q |
308 |
tccaccgatctacgacctaaatcagtcgcaatcgagttcctccgttcaattccgcattcctttactcactccttttggcctcaaccgttcaacgccgatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54376451 |
tccaccgatctacgacctaaatcagtcgcaatcgagttcctccgttcaattccgcattcctttactcactccttttggcctcaaccgttcaacgccgatt |
54376352 |
T |
|
| Q |
408 |
tcgttgcatctttcttcaacgatttcattggttatgtttccaaagctgcacaatcttcgtcggatttcgcggacgaggttgctggattcaccggtgaagt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54376351 |
tcgttgcatctttcttcaacgatttcattggttatgtttccaaagctgcacaatcttcgtcggatttcgcggacgaggttgctggattcaccggtgaagt |
54376252 |
T |
|
| Q |
508 |
t |
508 |
Q |
| |
|
| |
|
|
| T |
54376251 |
t |
54376251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University