View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18322_low_31 (Length: 212)
Name: NF18322_low_31
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 4045596 - 4045794
Alignment:
| Q |
1 |
ccctttccaaccttcaatattagttttgttcttgaaagaaggcactgtccattccacaagctccttagcataaacaccatcattgaacaaagactcagtt |
100 |
Q |
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| T |
4045596 |
ccctttccaaccttcaatattagttttgttcttgaaagaaggcactgtccattccacaagctccttagcataaacaccatcgttgaacaaagactcagtt |
4045695 |
T |
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| Q |
101 |
ataggcaacaaaggcaaaacttgtatactaagcctacactctctacattcagatgaagcccaccatagtgcactatctcttttattagcccacaaaatt |
199 |
Q |
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| T |
4045696 |
ataggcaacaaaggcaaaacttgtatactaagcctacactctctacattcagatgaagcccaccatagtgcactatctcttttattagcccacaaaatt |
4045794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 3754614 - 3754445
Alignment:
| Q |
29 |
ttcttgaaagaaggcactgtccattccacaagctccttagcataaacaccatcattgaacaaagactcagttataggcaacaaaggcaaaacttgtatac |
128 |
Q |
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| T |
3754614 |
ttcttcaaagaagggagtgtccattccactagctccttagcataaacaccatcattaaacaaagactcagtaataggcaacaaaggcataacttggatac |
3754515 |
T |
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| Q |
129 |
taagcctacactctctacattcagatgaagcccaccatagtgcactatctcttttattagcccacaaaat |
198 |
Q |
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| T |
3754514 |
taaccctacaccctctacattcagaaggagcccaccaaagtttactatctctcttattagcccacaaaat |
3754445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 6456782 - 6456924
Alignment:
| Q |
46 |
tgtccattccacaagctccttagcataaacaccatcattgaacaaagactcagttataggcaacaaaggcaaaacttgtatactaagcctacactctcta |
145 |
Q |
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| T |
6456782 |
tgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctc |
6456881 |
T |
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| Q |
146 |
cattcagatgaagcccaccatagtgcactatctcttttattag |
188 |
Q |
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| T |
6456882 |
cattgagcaggcgcaaaccatagtccactatctctcttattag |
6456924 |
T |
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