View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18322_low_6 (Length: 483)
Name: NF18322_low_6
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18322_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 468
Target Start/End: Original strand, 5015398 - 5015855
Alignment:
| Q |
12 |
agaagaagaaaggttggcaggataaattcttatatcttcagcaggtcgcgaggtgctcattaaatctcttgcgtagtccattcttacaaacacatatcat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5015398 |
agaagaagaaaggttggcaggataaattcttatatcttcagcaggtcgcgaggtgctcattaaatctcttgcgtagtccattcttacaaacacatatcat |
5015497 |
T |
|
| Q |
112 |
ggatcgtttcctcttatccagatatgattatttgatgatattgtagcaatgataaagcaattttgatgtggttatagttacaataaaat-acgctagctc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5015498 |
ggatcgtttcctcttatccagatatgattatttgatgatattgaagcaatgataaagcaattttgatgtggttatagttacaataaaattacgctagctc |
5015597 |
T |
|
| Q |
211 |
aactgaaacaaatgttgtaaaccttaaagtatatgaggaatgaggtttagaaatatcaaagcctttcacacggtgttgctcgccatacatgggtggctca |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5015598 |
aactgaaacaaatgttgtaaaccttaacgtatatgaggaatgaggtttagaaatatcaaagtctttcacacggtgttgctcgccatacttgggtggctca |
5015697 |
T |
|
| Q |
311 |
ttttatataaacttgattctatgctctctggatgtctgaaatcacattatttacctcgtgcagatgttcttaaagcttgactaggatacttacctagcta |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5015698 |
ttttatataaacttgattctatgctctctggatgtctgaaatcacattatttacctcgtgctgatgttcttaaagcttgactaggatacttacctagcta |
5015797 |
T |
|
| Q |
411 |
cacttggagaagtgcttatgaagcattgtgaggctgcaaatggagagtggataatggt |
468 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5015798 |
cacttggaaaagtgcttatgaagcattgtgaggctgcaaatggagagtggataatggt |
5015855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University