View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18322_low_9 (Length: 405)

Name: NF18322_low_9
Description: NF18322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18322_low_9
NF18322_low_9
[»] chr5 (13 HSPs)
chr5 (123-254)||(31619292-31619421)
chr5 (107-230)||(35185252-35185375)
chr5 (105-251)||(2611140-2611287)
chr5 (114-232)||(22180256-22180374)
chr5 (112-227)||(14863335-14863450)
chr5 (105-227)||(7609532-7609654)
chr5 (112-251)||(12187158-12187297)
chr5 (112-227)||(21052627-21052742)
chr5 (6-95)||(31619423-31619508)
chr5 (342-389)||(31619156-31619203)
chr5 (112-227)||(11320125-11320239)
chr5 (107-157)||(18677920-18677970)
chr5 (174-230)||(16802023-16802079)
[»] chr1 (19 HSPs)
chr1 (90-251)||(40391196-40391356)
chr1 (107-251)||(33827818-33827963)
chr1 (107-251)||(33840002-33840147)
chr1 (112-251)||(26855825-26855964)
chr1 (113-251)||(31884460-31884598)
chr1 (126-251)||(50127361-50127486)
chr1 (126-214)||(44109083-44109172)
chr1 (112-227)||(15419649-15419765)
chr1 (105-203)||(48282883-48282981)
chr1 (112-228)||(50468805-50468922)
chr1 (114-227)||(30627616-30627730)
chr1 (177-227)||(16963639-16963689)
chr1 (171-227)||(13534555-13534611)
chr1 (113-227)||(19066859-19066973)
chr1 (113-227)||(19114749-19114863)
chr1 (174-227)||(27742552-27742605)
chr1 (171-227)||(18910463-18910519)
chr1 (107-194)||(20471326-20471413)
chr1 (107-194)||(20560124-20560211)
[»] chr3 (19 HSPs)
chr3 (105-251)||(42163598-42163745)
chr3 (105-251)||(44291222-44291368)
chr3 (105-227)||(15671109-15671231)
chr3 (109-227)||(23208140-23208256)
chr3 (106-227)||(27143998-27144120)
chr3 (136-251)||(43862916-43863032)
chr3 (116-229)||(32720523-32720637)
chr3 (105-203)||(44041316-44041415)
chr3 (112-227)||(49710944-49711058)
chr3 (124-227)||(43014644-43014750)
chr3 (114-223)||(43652470-43652579)
chr3 (122-219)||(35322016-35322111)
chr3 (123-224)||(36258679-36258782)
chr3 (124-227)||(52992443-52992546)
chr3 (105-222)||(17109526-17109644)
chr3 (122-227)||(47877286-47877392)
chr3 (125-200)||(49419063-49419139)
chr3 (171-209)||(17560725-17560763)
chr3 (112-165)||(6785793-6785845)
[»] chr7 (11 HSPs)
chr7 (105-251)||(22035707-22035854)
chr7 (105-228)||(45907026-45907149)
chr7 (106-223)||(16861680-16861797)
chr7 (114-224)||(19689502-19689612)
chr7 (124-227)||(36636018-36636122)
chr7 (113-227)||(8117444-8117558)
chr7 (124-227)||(16563480-16563584)
chr7 (124-227)||(16602078-16602182)
chr7 (122-201)||(41434726-41434805)
chr7 (105-156)||(27364663-27364714)
chr7 (106-226)||(21798798-21798917)
[»] chr4 (10 HSPs)
chr4 (122-251)||(31647696-31647825)
chr4 (122-223)||(38320127-38320229)
chr4 (112-201)||(31241950-31242040)
chr4 (112-228)||(19147147-19147263)
chr4 (107-236)||(47397595-47397724)
chr4 (112-165)||(38319539-38319592)
chr4 (179-251)||(20542717-20542788)
chr4 (147-227)||(3319283-3319364)
chr4 (192-228)||(14615177-14615213)
chr4 (174-214)||(51759207-51759247)
[»] chr2 (9 HSPs)
chr2 (122-227)||(21646486-21646591)
chr2 (105-227)||(19889744-19889867)
chr2 (126-235)||(37913017-37913126)
chr2 (172-251)||(11610469-11610548)
chr2 (124-230)||(32345474-32345580)
chr2 (171-227)||(18243797-18243853)
chr2 (112-232)||(23760592-23760711)
chr2 (122-229)||(23788415-23788521)
chr2 (112-165)||(18243303-18243356)
[»] scaffold0886 (1 HSPs)
scaffold0886 (124-251)||(1116-1243)
[»] chr8 (12 HSPs)
chr8 (105-227)||(28462535-28462657)
chr8 (113-227)||(39209363-39209476)
chr8 (105-251)||(39065528-39065672)
chr8 (123-227)||(900243-900348)
chr8 (103-223)||(39534128-39534248)
chr8 (105-227)||(41675663-41675785)
chr8 (127-227)||(37919398-37919499)
chr8 (112-223)||(29795508-29795619)
chr8 (122-205)||(20821911-20821994)
chr8 (112-224)||(30924834-30924947)
chr8 (174-227)||(38362265-38362318)
chr8 (125-201)||(14110626-14110701)
[»] scaffold0117 (1 HSPs)
scaffold0117 (122-228)||(16839-16945)
[»] scaffold0078 (1 HSPs)
scaffold0078 (113-251)||(861-1000)
[»] scaffold0034 (1 HSPs)
scaffold0034 (114-232)||(22425-22543)
[»] scaffold0006 (1 HSPs)
scaffold0006 (122-227)||(38800-38905)
[»] chr6 (6 HSPs)
chr6 (112-227)||(21809805-21809920)
chr6 (106-251)||(17506239-17506386)
chr6 (107-224)||(4803157-4803275)
chr6 (139-251)||(10252940-10253054)
chr6 (174-227)||(10008191-10008245)
chr6 (174-251)||(19418569-19418647)
[»] scaffold0068 (1 HSPs)
scaffold0068 (107-228)||(52010-52131)
[»] scaffold1372 (1 HSPs)
scaffold1372 (105-165)||(1263-1322)
[»] scaffold0005 (1 HSPs)
scaffold0005 (192-228)||(202163-202199)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 31619421 - 31619292
Alignment:
Q  123 ctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcatttggtgcttaa 222  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  31619421 ctataaatagaattttctgtcttagaaatataaac-gtcacttctatgaaataataattacattactttttaataaaaatttacttcatttggtgcttaa 31619323  T
Q  223 ccaatacctcagaggcactagttaacattttc 254  Q
    ||||| || |||||||||| ||||||||||||    
T  31619322 ccaatgcc-cagaggcactggttaacattttc 31619292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 35185375 - 35185252
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttat 206  Q
    |||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||| | |  | |||||||||||||||||||||||||||||||||    
T  35185375 gcactggttaaagaatctataaatagaattttatgtcttgaaaatataaactgtcacttttatttagtaataattacattactttttaataaaaacttat 35185276  T
Q  207 ttcatttggtgcttaaccaatacc 230  Q
    || |||||||||||||||||||||    
T  35185275 tttatttggtgcttaaccaatacc 35185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 2611140 - 2611287
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||| ||||||||||||| ||| ||||||| |||||||| ||||||||| || | || ||||||||||||||||||||||||||||||    
T  2611140 gggcactggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaaact 2611239  T
Q  204 tatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    || ||||||||||||||||||||| || ||| ||| || |||||||||    
T  2611240 tacttcatttggtgcttaaccaatgccccaggggccctggttaacatt 2611287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 22180256 - 22180374
Alignment:
Q  114 ttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcattt 213  Q
    ||||||| |||||||||| |||||||| | ||||||||||||||||||| || | | |||||||||||| |||| ||||||||||||| |||||| ||||    
T  22180256 ttaaggaatctataaataaaattttctattttgaaaatataaactgtcatttttattaaataataattatattattttttaataaaaatttattttattt 22180355  T
Q  214 ggtgcttaaccaatacctc 232  Q
    |||||||||||||||||||    
T  22180356 ggtgcttaaccaatacctc 22180374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 14863450 - 14863335
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    |||||| || |||||||||| |||||  |||||||||||||||||||||||||| || | || |||||||||||||| ||||||||||||||||| ||      
T  14863450 ggttaaagaatctataaatataattta-tgtcttgaaaatataaactgtcactttttatcaagtaataattacattaatttttaataaaaacttactttt 14863352  T
Q  211 tttggtgcttaaccaat 227  Q
    |||||||||||||||||    
T  14863351 tttggtgcttaaccaat 14863335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 7609532 - 7609654
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| | ||||||| ||||||| |||||||| |||| ||| ||||||||||| ||| || || | || ||||||||||||||||||||||||||||||    
T  7609532 gggcactgattaaggaatctataattagaattt-ctgttttggaaatataaactatcattttttatcaagtaataattacattactttttaataaaaact 7609630  T
Q  204 tatttcatttggtgcttaaccaat 227  Q
    || ||| |||||||||||||||||    
T  7609631 tacttcttttggtgcttaaccaat 7609654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 12187297 - 12187158
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattacttttt-aataaaaacttatttca 210  Q
    |||||| || |||| |||||||||||| ||||||| |||||||||| ||||||| ||  || |||||||||||||| ||||| ||||||||||||  | |    
T  12187297 ggttaaagaatctacaaatagaatttt-tgtcttggaaatataaacggtcactttttacaagtaataattacattatttttttaataaaaacttacctta 12187199  T
Q  211 tttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    |||||||||||| |||| |||||| | |||  |||||||||    
T  12187198 tttggtgcttaatcaatgcctcagggacacaggttaacatt 12187158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 21052627 - 21052742
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||||| | |||||||| ||||| |  ||||| |||||||||||||||||| || | || |||||||||||| | ||||||||||||||||| |||     
T  21052627 ggttaaggaatttataaataaaatttcca-tcttgcaaatataaactgtcactttttatcaagtaataattacatgattttttaataaaaacttacttct 21052725  T
Q  211 tttggtgcttaaccaat 227  Q
    |||||||||||||||||    
T  21052726 tttggtgcttaaccaat 21052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 31619508 - 31619423
Alignment:
Q  6 agtgagaagaaacttgaacttcttaacatgtgattaattaggtgttcgatttctggtttatacaaatggaaaaaattcgattaaagggtc 95  Q
    ||||| |||||||||| ||| |||||||||||     |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  31619508 agtgataagaaacttggactccttaacatgtg----gttaggtgttcaatttctgatttttacaaatggaaaaaattcgattaaagggtc 31619423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 342 - 389
Target Start/End: Complemental strand, 31619203 - 31619156
Alignment:
Q  342 taatgacgtttagaaagtcttgcatatatattatttaaataactcata 389  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  31619203 taatgacgtttagaaagtcttgcatatataatatttaaataactcata 31619156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 11320239 - 11320125
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||||| ||||||| || ||||| || ||||  |||||||||||||||||| || | || |||||||||||||||||||||||||||| |||  |      
T  11320239 ggttaaggaatctataattaaaattt-ctatcttagaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaa-ttaacttt 11320142  T
Q  211 tttggtgcttaaccaat 227  Q
    |||||||||||||||||    
T  11320141 tttggtgcttaaccaat 11320125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 18677920 - 18677970
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaac 157  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  18677920 gcactggttaaggaatctataaatagaattttctatcttgaaaatataaac 18677970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 16802079 - 16802023
Alignment:
Q  174 taataattacattactttttaataaaaacttatttcatttgg-tgcttaaccaatacc 230  Q
    |||||||||||||||||||| ||||||| ||||||  ||||| |||||||||||||||    
T  16802079 taataattacattacttttt-ataaaaagttatttgttttggttgcttaaccaatacc 16802023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 40391196 - 40391356
Alignment:
Q  90 agggtcttgttaaccgggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattac 188  Q
    |||||||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||||||| || | || |||||||||||||||    
T  40391196 agggtcttgttaa--gggcactgattaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttatcaagtaataattacattac 40391293  T
Q  189 tttttaataaaaacttatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    ||||| ||||||||| | ||||||||||||||||||||| |||| |||  ||| |||||||||    
T  40391294 tttttgataaaaactcacttcatttggtgcttaaccaatgcctcggagatactggttaacatt 40391356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 33827818 - 33827963
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactta 205  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||||||  |||||| || | || |||||||||||||||||||||||||||| |||    
T  33827818 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattacattactttttaataaaaagtta 33827917  T
Q  206 tttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    ||| ||||||| ||||||||||||||||||| || | |||||||||    
T  33827918 ttttatttggttcttaaccaatacctcagagacattggttaacatt 33827963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 33840147 - 33840002
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactta 205  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||||||  |||||| || | || |||||||||||||||||||||||||||| |||    
T  33840147 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattacattactttttaataaaaagtta 33840048  T
Q  206 tttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    ||| ||||||| ||||||||||||||||||| || | |||||||||    
T  33840047 ttttatttggttcttaaccaatacctcagagacattggttaacatt 33840002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 26855825 - 26855964
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    |||||| || ||||||||||||||||| ||||||| |||||||| ||||||||| || | || ||||||||||||||| |||||||||||| ||| || |    
T  26855825 ggttaaagaatctataaatagaattttttgtcttggaaatataatctgtcactttttatcaagtaataattacattac-ttttaataaaaatttacttta 26855923  T
Q  211 tttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    ||||||||||||||||| || | |||||||  |||||||||    
T  26855924 tttggtgcttaaccaatgccccggaggcaccggttaacatt 26855964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 31884460 - 31884598
Alignment:
Q  113 gttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcat 211  Q
    |||||| | |||||||||||||||| || ||||| |||||||||||| || || || | ||||||||||||||||||||||||||||||||||| ||  |    
T  31884460 gttaagaaatctataaatagaattt-ctatcttggaaatataaactgacattttttatcaaataataattacattactttttaataaaaacttacttttt 31884558  T
Q  212 ttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    |||||||||||||||| |||| | |||| | |||||||||    
T  31884559 ttggtgcttaaccaatgcctccggggcaatggttaacatt 31884598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 50127361 - 50127486
Alignment:
Q  126 taaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaacc 224  Q
    |||||||||||| |||||||| ||||||||||||||| || || |  | |||||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  50127361 taaatagaattt-ctgtcttggaaatataaactgtcattttttatcgagtaataattacattactttttaataaaaacttacttcttttggtacttaacc 50127459  T
Q  225 aatacctcagaggcactagttaacatt 251  Q
    ||| || | | |||||| |||||||||    
T  50127460 aatgccccgggggcactggttaacatt 50127486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 44109083 - 44109172
Alignment:
Q  126 taaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttg 214  Q
    ||||||||||||||| ||||| |||||||||||||| ||| || | || |||||||||||||||||||||||||||||||| ||||||||    
T  44109083 taaatagaattttctatcttggaaatataaactgtccctttttattaagtaataattacattactttttaataaaaacttacttcatttg 44109172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 15419649 - 15419765
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    |||||| || ||||||||||||||||| ||| ||| ||||||||||||| |||| || | || ||||||||| |||||||||||||||||| ||| || |    
T  15419649 ggttaatgaatctataaatagaattttttgtattggaaatataaactgttactttttattaagtaataattatattactttttaataaaaatttacttta 15419748  T
Q  211 tttggtgcttaaccaat 227  Q
    ||||||| |||||||||    
T  15419749 tttggtgtttaaccaat 15419765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 48282883 - 48282981
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || | |  ||||||||||||||||||||| ||||||||    
T  48282883 gggcactggttaaggaatctataaatagaattt-ctgtcttgaaaatataatctgtcactttttatcaggtaataattacattactttttagtaaaaact 48282981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 50468805 - 50468922
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||||| |||||||||| |||||||| ||||  |||||||| |||||| || || | || |||||||||||||||||||||||||||| ||| || |    
T  50468805 ggttaaggaatctataaataaaattttctatcttagaaatataacctgtcattttttattaagtaataattacattactttttaataaaaatttacttta 50468904  T
Q  211 tttggtgcttaaccaata 228  Q
     ||| | |||||||||||    
T  50468905 cttgatacttaaccaata 50468922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 30627616 - 30627730
Alignment:
Q  114 ttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaa-taaaaacttatttcat 211  Q
    ||||||| ||||||||||||| ||| ||||||| |||||||| ||||||||| || | || |||| ||||||||||||||||| |||||| ||| |||      
T  30627616 ttaaggaatctataaatagaa-tttatgtcttggaaatataacctgtcactttttataaagtaatgattacattactttttaattaaaaatttacttctc 30627714  T
Q  212 ttggtgcttaaccaat 227  Q
    ||||||||||||||||    
T  30627715 ttggtgcttaaccaat 30627730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 16963639 - 16963689
Alignment:
Q  177 taattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  16963639 taattacattactttttaataaaaatttacttcatttggtgcttaaccaat 16963689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 13534555 - 13534611
Alignment:
Q  171 aaataataattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    ||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||    
T  13534555 aaataataattacattactttttaataaaaatttactttatttggcgcttaaccaat 13534611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 19066973 - 19066859
Alignment:
Q  113 gttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaa-taataattacattactttttaataaaaacttatttcat 211  Q
    |||||| | ||||||||||||||| | ||||||  ||||||||| |||||||| ||   || ||||||||||| |||||||||||||||| ||| || ||    
T  19066973 gttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttaccaagtaataattacaatactttttaataaaaatttactttat 19066875  T
Q  212 ttggtgcttaaccaat 227  Q
    |||| |||||||||||    
T  19066874 ttggcgcttaaccaat 19066859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 19114863 - 19114749
Alignment:
Q  113 gttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaa-taataattacattactttttaataaaaacttatttcat 211  Q
    |||||| | ||||||||||||||| | ||||||  ||||||||| |||||||| ||   || ||||||||||| |||||||||||||||| ||| || ||    
T  19114863 gttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttaccaagtaataattacaatactttttaataaaaatttactttat 19114765  T
Q  212 ttggtgcttaaccaat 227  Q
    |||| |||||||||||    
T  19114764 ttggcgcttaaccaat 19114749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 27742605 - 27742552
Alignment:
Q  174 taataattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    |||||||||||||||||||||||||||| ||| ||| |||| ||||||||||||    
T  27742605 taataattacattactttttaataaaaaattacttcttttgttgcttaaccaat 27742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 18910463 - 18910519
Alignment:
Q  171 aaataataattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| ||||    
T  18910463 aaataatgattacattactttttaataaaaatttatttcttttggtgtttaatcaat 18910519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 20471326 - 20471413
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattacttttta 194  Q
    |||| ||||||| | |||||||||| |||| | ||||||  |||||||||||||||||| || | ||| ||||||||||||||||||||    
T  20471326 gcactggttaagaaatctataaatataattgt-tgtcttagaaatataaactgtcactttttatcaaaaaataattacattacttttta 20471413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 20560211 - 20560124
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattacttttta 194  Q
    |||| ||||||| | |||||||||| |||| | ||||||  |||||||||||||||||| || | ||| ||||||||||||||||||||    
T  20560211 gcactggttaagaaatctataaatataattgt-tgtcttagaaatataaactgtcactttttatcaaaaaataattacattacttttta 20560124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 42163598 - 42163745
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||| || | || ||||||||||||||||||||||||||||||    
T  42163598 gggcactggttaaggaatctattaatagaattttctgtcttggaaatataaaccgtcactttttattaagtaataattacattactttttaataaaaact 42163697  T
Q  204 tatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    || |||||||||||  |||||||| || | |||||||  |||||||||    
T  42163698 tacttcatttggtgtgtaaccaatgccccggaggcaccggttaacatt 42163745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 44291222 - 44291368
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||| || | || |||||||||||||||||||||||||| |||    
T  44291222 gggcactggttaaggaatctataaatagaattt-ctgtcttggaaatataaactgtcactttttattaagtaataattacattactttttaataaatact 44291320  T
Q  204 tatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    || ||| ||||||||||||||||| || | | |||||| |||||||||    
T  44291321 tacttcttttggtgcttaaccaatgccccgggggcactggttaacatt 44291368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 15671109 - 15671231
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||| |||||||||| |||||| ||||||  |||||||||||||||||| || | || ||||||||||||||||||||||||||||||    
T  15671109 gggcactggttaaggaatctataaataaaatttt-tgtcttcgaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaact 15671207  T
Q  204 tatttcatttggtgcttaaccaat 227  Q
    || |||||||||| ||||||||||    
T  15671208 tacttcatttggttcttaaccaat 15671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 23208140 - 23208256
Alignment:
Q  109 accggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataa-taattacattactttttaataaaaacttatt 207  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||   | ||| |||||||||||||||||||||||||| ||||    
T  23208140 accggttaagaaatctataaatagaattttctgtcttgaaaatataaactgtcacttttt---attaagtaattacattactttttaataaaaacgtatt 23208236  T
Q  208 tcatttggtgcttaaccaat 227  Q
    | |||||||  |||||||||    
T  23208237 ttatttggtatttaaccaat 23208256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 27144120 - 27143998
Alignment:
Q  106 ggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactt 204  Q
    ||||| ||||||| | ||||||||||||||||||||| ||  ||||||||||||| |||| || | || |||||||||||||| ||||||||||||||||    
T  27144120 ggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttattaagtaataattacattattttttaataaaaactt 27144021  T
Q  205 atttcatttggtgcttaaccaat 227  Q
    | |||||||| ||||||||||||    
T  27144020 agttcatttgttgcttaaccaat 27143998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 43863032 - 43862916
Alignment:
Q  136 tttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaaccaatacctcag 234  Q
    ||||||||||| |||||||||||||||||  || | || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||    
T  43863032 tttctgtcttggaaatataaactgtcactctttattaagtaataattacattactttttaataaaaacttacttcatttggggcttaaccaatgccccag 43862933  T
Q  235 aggcactagttaacatt 251  Q
     |||||  |||||||||    
T  43862932 gggcaccggttaacatt 43862916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 32720523 - 32720637
Alignment:
Q  116 aaggactctataaatagaattttctgtcttgaaaatataaactgtcact-tctttgaaataataattacattactttttaataaaaacttatttcatttg 214  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||| | | | || ||||||||| |||| ||||||||||||||||| || ||||     
T  32720523 aaggaatctattaatagaattttctttcttgaaaatataaactgtcactatttattaagtaataattatattattttttaataaaaacttacttaattta 32720622  T
Q  215 gtgcttaaccaatac 229  Q
    |||||||||||||||    
T  32720623 gtgcttaaccaatac 32720637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 44041316 - 44041415
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| |||||| || |||||||||||||||||||||||||  ||||||||||||||||| || | || |||||||||||||||||||||||| |||||    
T  44041316 gggcactggttaatgaatctataaatagaattttctgtcttggtaatataaactgtcactttttattaagtaataattacattactttttaatataaact 44041415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 49711058 - 49710944
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcat 211  Q
    ||||||||| |||||||||||||||| |||||||  ||||||||| ||| | || ||  |||||||||||| |||| |||||||||||||||||||| ||    
T  49711058 ggttaaggaatctataaatagaattt-ctgtcttagaaatataaaatgttattttttataaataataattatattaatttttaataaaaacttattttat 49710960  T
Q  212 ttggtgcttaaccaat 227  Q
    ||||||||||| ||||    
T  49710959 ttggtgcttaatcaat 49710944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 43014750 - 43014644
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttcttt---gaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    |||||||| |||||||||||||| ||||||||| |||||||| | |   | |||| ||||||||||||||||||| ||||||||| || |||||||||||    
T  43014750 tataaatataattttctgtcttggaaatataaattgtcacttttatttagtaatagtaattacattactttttaacaaaaacttactttatttggtgctt 43014651  T
Q  221 aaccaat 227  Q
    || ||||    
T  43014650 aatcaat 43014644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 43652470 - 43652579
Alignment:
Q  114 ttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatt 212  Q
    ||||||| |||||||||| ||||| || ||||| |||||||| |||||| || || | | |||||||||||||||||||||| || ||||||| ||||||    
T  43652470 ttaaggaatctataaataaaattt-ctatcttggaaatataatctgtcattttttatcagataataattacattactttttagtagaaacttacttcatt 43652568  T
Q  213 tggtgcttaac 223  Q
    |||||||||||    
T  43652569 tggtgcttaac 43652579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 35322111 - 35322016
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgct 219  Q
    |||||||||||||||||  |||||  ||||||||||| |||||| || | || |||||||||||||||||||||||||||||||| ||| |||||||||    
T  35322111 tctataaatagaatttt--gtcttagaaatataaact-tcactttttattaagtaataattacattactttttaataaaaacttacttcttttggtgct 35322016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 36258782 - 36258679
Alignment:
Q  123 ctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattac-tttttaataaaaacttatttcatttggtgctt 220  Q
    |||||||||||||||||||||||  ||||||||| ||||| || || | || |||| |||||||||| ||||||||||||||||| || |||||||| ||    
T  36258782 ctataaatagaattttctgtcttagaaatataaaatgtcattttttattaagtaatcattacattacttttttaataaaaacttactttatttggtgttt 36258683  T
Q  221 aacc 224  Q
    ||||    
T  36258682 aacc 36258679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 52992546 - 52992443
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcatttggtgcttaac 223  Q
    |||||||| |||||||||| ||||||||||||||| ||| || ||   | |||||||||||||| |||||  |||||| ||| || ||||||||||||||    
T  52992546 tataaataaaattttctgttttgaaaatataaactatcattttttattagtaataattacattattttttggtaaaaaattactttatttggtgcttaac 52992447  T
Q  224 caat 227  Q
    ||||    
T  52992446 caat 52992443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 17109526 - 17109644
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcac-ttctttgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||| | | ||||||||||||||||| ||||| ||||||||||||| || || | | || |||||||||||| ||||||||||||||| |    
T  17109526 gggcacgggttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttattaagtaataattacataactttttaataaaaatt 17109625  T
Q  204 tatttcatttggtgcttaa 222  Q
    || || |||| ||| ||||    
T  17109626 tactttatttagtgtttaa 17109644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 47877286 - 47877392
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    |||||||||| |||||| | | || |||||||||||| ||| || || | |||||||||||||| || ||||||||||||| || ||||||||||||| |    
T  47877286 tctataaataaaattttatattttaaaaatataaactatcattttttattaaataataattacactattttttaataaaaatttgtttcatttggtgcat 47877385  T
Q  221 aaccaat 227  Q
    |||||||    
T  47877386 aaccaat 47877392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 49419063 - 49419139
Alignment:
Q  125 ataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaa 200  Q
    |||||||||||||||||| ||  ||||||||| |||||||| || | || |||||||||||| ||||||||||||||    
T  49419063 ataaatagaattttctgtattagaaatataaattgtcactttttattaactaataattacataactttttaataaaa 49419139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 17560763 - 17560725
Alignment:
Q  171 aaataataattacattactttttaataaaaacttatttc 209  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  17560763 aaataataattacattaatttttaataaaaatttatttc 17560725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 6785793 - 6785845
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcactt 165  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||| ||| ||||    
T  6785793 ggttaaggattctacaaatagaatttt-tgtcttgaaaatataaaatgttactt 6785845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 251
Target Start/End: Complemental strand, 22035854 - 22035707
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||| ||   || |||||||||||||| |||||||||||||||    
T  22035854 gggcactggttaatgaatctataaatagaattttctgtcttggaaatataaactgtcactttttaataagtaataattacattattttttaataaaaact 22035755  T
Q  204 tatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    || |||||||||  ||||||| || || | |||||| |||||||||||    
T  22035754 tacttcatttggaacttaaccgatgccccggaggcattagttaacatt 22035707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 45907026 - 45907149
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||| |||||||||||| |||| ||||||| |||||||||||||||||| || | || ||||||||||||||||||||||||||||||    
T  45907026 gggcacgggttaaggaatctataaatagattttt-tgtcttgtaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaact 45907124  T
Q  204 tatttcatttggtgcttaaccaata 228  Q
    || ||| |||  |||||||||||||    
T  45907125 tacttctttttatgcttaaccaata 45907149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 16861797 - 16861680
Alignment:
Q  106 ggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactt 204  Q
    ||||||||||||| | ||||||||||||||||  ||||||| ||||||||||||||| || || | ||||| |||||||||||||||||||||||| |||    
T  16861797 ggcaccggttaagaaatctataaatagaattta-tgtcttggaaatataaactgtcattttttattaaatattaattacattactttttaataaaacctt 16861699  T
Q  205 atttcatttggtgcttaac 223  Q
    ||||| |||||||||||||    
T  16861698 atttcttttggtgcttaac 16861680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 19689612 - 19689502
Alignment:
Q  114 ttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatt 212  Q
    ||||||| |||||||||| || ||||| ||||| ||||||||||| ||||||| | | |||||||||||||||||||||||||| |||||||| ||||||    
T  19689612 ttaaggaatctataaatacaactttctatcttgtaaatataaactatcacttcgtattaaataataattacattactttttaat-aaaacttacttcatt 19689514  T
Q  213 tggtgcttaacc 224  Q
    ||||| ||||||    
T  19689513 tggtgtttaacc 19689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 36636018 - 36636122
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaa 222  Q
    ||||||||||||||||| ||||| | |||||||| ||||| | || | || |||||||||||||| ||||||||||||||||| || |||||||||||||    
T  36636018 tataaatagaattttctatcttggagatataaacggtcaccttttattaagtaataattacattattttttaataaaaacttactttatttggtgcttaa 36636117  T
Q  223 ccaat 227  Q
    |||||    
T  36636118 ccaat 36636122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 8117444 - 8117558
Alignment:
Q  113 gttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcat 211  Q
    |||| ||| ||||||||||||||||  ||||||||||||||||| ||| | || || | ||||||||||||||||||||||||||||||||||| |||||    
T  8117444 gttatggaatctataaatagaattta-tgtcttgaaaatataaattgttattttttattaaataataattacattactttttaataaaaacttacttcat 8117542  T
Q  212 ttggtgcttaaccaat 227  Q
    || | | |||||||||    
T  8117543 ttagcgtttaaccaat 8117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 16563480 - 16563584
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttctttg-aaataataattacattactttttaataaaaacttatttcatttggtgcttaa 222  Q
    ||||||||||||||| | ||||| ||||||||||| | | || |  | ||||||||||||||||||||||||||||||||||| || |||| ||| ||||    
T  16563480 tataaatagaattttttatcttggaaatataaactattatttttcagtaaataataattacattactttttaataaaaacttaatttatttagtgtttaa 16563579  T
Q  223 ccaat 227  Q
    |||||    
T  16563580 ccaat 16563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 16602182 - 16602078
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttctttg-aaataataattacattactttttaataaaaacttatttcatttggtgcttaa 222  Q
    ||||||||||||||| | ||||| ||||||||||| | | || |  | ||||||||||||||||||||||||||||||||||| || |||| ||| ||||    
T  16602182 tataaatagaattttttatcttggaaatataaactattatttttcagtaaataataattacattactttttaataaaaacttaatttatttagtgtttaa 16602083  T
Q  223 ccaat 227  Q
    |||||    
T  16602082 ccaat 16602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 41434805 - 41434726
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaa 201  Q
    |||||||||| ||||| |||||||  |||||||||||||||||| || | ||||||||||||||||| |||||||||||||    
T  41434805 tctataaatataattt-ctgtcttagaaatataaactgtcactttttatcaaataataattacattattttttaataaaaa 41434726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 27364714 - 27364663
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaa 156  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| |||||||||    
T  27364714 gggcactggttaaggaatctataaatagaattttatgtcttggaaatataaa 27364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 21798917 - 21798798
Alignment:
Q  106 ggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactt 204  Q
    ||||| ||||||| | || | |||||||||||  ||||||| || |||||||||||| || |  | || ||||||||||||||||| |||||||||| ||    
T  21798917 ggcacgggttaagaaatccaaaaatagaattta-tgtcttggaattataaactgtcatttttcattaagtaataattacattacttcttaataaaaa-tt 21798820  T
Q  205 atttcatttggtgcttaaccaa 226  Q
    | ||| ||||||||||||||||    
T  21798819 acttcttttggtgcttaaccaa 21798798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 31647825 - 31647696
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    |||||||||||||||| |||||||  ||||||||||| |||||| || | || |||||||||||||||||||||||||||||||||||| ||||||||||    
T  31647825 tctataaatagaattt-ctgtcttagaaatataaactatcactttttatcaagtaataattacattactttttaataaaaacttatttcttttggtgctt 31647727  T
Q  221 aaccaatacctcagaggcactagttaacatt 251  Q
    |||||||||||| | |||||  |||||||||    
T  31647726 aaccaatacctcgggggcaccggttaacatt 31647696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 38320127 - 38320229
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| || ||||| |||||    
T  38320127 tctataaatagaattttctgtcttggaaatataaactgtcacttcttattaagtaataattacattactttttaataaaaacttactttatttgatgctt 38320226  T
Q  221 aac 223  Q
    |||    
T  38320227 aac 38320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 31241950 - 31242040
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaa 201  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||    
T  31241950 ggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaaataataattacattactttttaataaaaa 31242040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 19147147 - 19147263
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||| | ||||||| |||||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||| |||||||||||||| |||     
T  19147147 ggttaagaaatctataagtagaattt-ctgtcttgaaaatataaactgtcactttttatcaaataataattacattacttattaataaaaacttacttct 19147245  T
Q  211 tttggtgcttaaccaata 228  Q
    |||||||||||| |||||    
T  19147246 tttggtgcttaatcaata 19147263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 47397724 - 47397595
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactta 205  Q
    |||| ||||||||| |||||||||||||||| || | ||  |||||||||||||||||| || | |||||||||||| ||||||||| |||||||| |||    
T  47397724 gcactggttaaggaatctataaatagaattt-ctattttagaaatataaactgtcactttttatcaaataataattatattacttttaaataaaaattta 47397626  T
Q  206 tttcatttggtgcttaaccaatacctcagag 236  Q
     | | |||||||||||||||||||| |||||    
T  47397625 ctacttttggtgcttaaccaataccgcagag 47397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 38319539 - 38319592
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcactt 165  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  38319539 ggttaaggaatctataaatagaattttctgttttgaaaatataaactgtcactt 38319592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 20542717 - 20542788
Alignment:
Q  179 attacattactttttaataaaaacttatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||||| || | | ||||||||||||||||    
T  20542717 attatattactttttaataaaaacttaattcttttggtgcttaaccaatgcc-ccggggcactagttaacatt 20542788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 3319283 - 3319364
Alignment:
Q  147 aaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    |||||||||||||||| || |  | |||||||||||| ||||| |||||||||||| ||||||| |||| ||||||| ||||    
T  3319283 aaaatataaactgtcatttttcatcaaataataattatattaccttttaataaaaatttatttcttttgatgcttaatcaat 3319364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 14615177 - 14615213
Alignment:
Q  192 ttaataaaaacttatttcatttggtgcttaaccaata 228  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14615177 ttaataaaaatttatttcatttggtgcttaaccaata 14615213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 51759247 - 51759207
Alignment:
Q  174 taataattacattactttttaataaaaacttatttcatttg 214  Q
    |||||| ||||||| ||||||||||||||||| ||||||||    
T  51759247 taataactacattattttttaataaaaacttacttcatttg 51759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 21646486 - 21646591
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcatttggtgctta 221  Q
    |||||| |||||||||||||||||| ||||||||| |||||||| | | || ||||||||||||||||||||||| |||||||| ||||||||||| |||    
T  21646486 tctatacatagaattttctgtcttggaaatataaagtgtcacttttattaagtaataattacattactttttaatgaaaacttacttcatttggtgttta 21646585  T
Q  222 accaat 227  Q
    ||||||    
T  21646586 accaat 21646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 19889867 - 19889744
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||| | ||||||||||||||||| ||| ||| ||||||||  |||||| | || | || ||||||||||||||||||||||| ||||||    
T  19889867 gggcactggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttattaagtaataattacattactttttaatgaaaact 19889768  T
Q  204 tatttcatttggtgcttaaccaat 227  Q
    || |||||||| ||||||||||||    
T  19889767 tacttcatttgatgcttaaccaat 19889744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 37913017 - 37913126
Alignment:
Q  126 taaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaacc 224  Q
    ||||||||||||| | |||||||||||||||| ||||||| || | || ||||||| |||||| ||||||||||||||||| ||| |||| |||||||||    
T  37913017 taaatagaatttt-tatcttgaaaatataaaccgtcactttttatcaagtaataatcacattaatttttaataaaaacttacttcttttgatgcttaacc 37913115  T
Q  225 aatacctcaga 235  Q
    |||||| ||||    
T  37913116 aataccccaga 37913126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 11610469 - 11610548
Alignment:
Q  172 aataataattacattactttttaataaaaacttatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| || | | |||||| |||||||||    
T  11610469 aataataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccgggggcactggttaacatt 11610548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 32345580 - 32345474
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaa 222  Q
    |||||||||||||||||||||| |||||||||||||||| || || | |||||||||||| |||| ||||| ||||||||||| || ||||  || ||||    
T  32345580 tataaatagaattttctgtcttaaaaatataaactgtcattttttattaaataataattatatta-tttttgataaaaacttactttatttattgtttaa 32345482  T
Q  223 ccaatacc 230  Q
    ||||||||    
T  32345481 ccaatacc 32345474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 18243797 - 18243853
Alignment:
Q  171 aaataataattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    |||||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  18243797 aaataataattatattactttttaataaaaacttactttatttggtgcttaaccaat 18243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 23760592 - 23760711
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcat 211  Q
    |||||| || |||||||||| |||||  |||||| |||||||||||| | | || | | || ||||||||||||||||||||||  |||| ||| ||  |    
T  23760592 ggttaacgaatctataaatataattta-tgtcttaaaaatataaactcttatttttatcaagtaataattacattactttttaaataaaatttacttttt 23760690  T
Q  212 ttggtgcttaaccaatacctc 232  Q
     | ||||||||||||||||||    
T  23760691 gtagtgcttaaccaatacctc 23760711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 23788415 - 23788521
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    ||||||||||||||||  | | ||||||||||||| | ||| || || | || |||||||||||||||||||||||||||| ||||||  ||||||| ||    
T  23788415 tctataaatagaattta-tattttgaaaatataaattatcattttttattaagtaataattacattactttttaataaaaatttattt-ttttggtgttt 23788512  T
Q  221 aaccaatac 229  Q
    || ||||||    
T  23788513 aatcaatac 23788521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 18243303 - 18243356
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcactt 165  Q
    ||||||||| |||||||||| |||||| ||| ||| ||||||||||| ||||||    
T  18243303 ggttaaggaatctataaataaaattttttgttttggaaatataaactttcactt 18243356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 1116 - 1243
Alignment:
Q  124 tataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaa 222  Q
    ||||||||||||||| | |||||||||||||||||||||||| || | || ||||||||||||||||||||||||||| ||||||| ||||| | |||||    
T  1116 tataaatagaatttttt-tcttgaaaatataaactgtcactttttattaagtaataattacattactttttaataaaagcttattttatttgattcttaa 1214  T
Q  223 ccaatacctcagaggcactagttaacatt 251  Q
    |||||| |||||| ||||  |||||||||    
T  1215 ccaatatctcagaagcaccggttaacatt 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 28462535 - 28462657
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| |||||| || ||||||||||||||||| ||||||| ||||||||||| |||||| || | || ||||||||||||||| ||||||||||||||    
T  28462535 gggcactggttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttattaagtaataattacattac-ttttaataaaaact 28462633  T
Q  204 tatttcatttggtgcttaaccaat 227  Q
    || ||||||||||| |||||||||    
T  28462634 tacttcatttggtgtttaaccaat 28462657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 39209363 - 39209476
Alignment:
Q  113 gttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaacttatttcatt 212  Q
    |||||||| | ||||||||||||||||||| ||| |||||||||||||||||| | | ||||||||| ||||| ||||||||||||||| ||| ||| ||    
T  39209363 gttaaggaatttataaatagaattttctgttttggaaatataaactgtcacttttattaaataataa-tacatcactttttaataaaaatttacttcgtt 39209461  T
Q  213 tggtgcttaaccaat 227  Q
    |||||||||||||||    
T  39209462 tggtgcttaaccaat 39209476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 39065528 - 39065672
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||| ||||||||  |||||||||||||||| ||||||| ||||||||||||||||||| || | || ||||||| |||||| ||||||||||||| |    
T  39065528 gggcactggttaagg--tctataaatagaattt-ctgtcttaaaaatataaactgtcactttttatcaagtaataatgacattattttttaataaaaatt 39065624  T
Q  204 tatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    || ||| ||| ||||||||||||| |  ||||||||||||||| ||||    
T  39065625 tacttcttttagtgcttaaccaatgctccagaggcactagttagcatt 39065672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 900243 - 900348
Alignment:
Q  123 ctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctta 221  Q
    ||||||||| ||||||||||||||||||| |||||||||| || || | || ||||||||| |||||||||||||||||||||| || |||||||| |||    
T  900243 ctataaatataattttctgtcttgaaaatttaaactgtcattttttattaagtaataattatattactttttaataaaaacttactttatttggtgttta 900342  T
Q  222 accaat 227  Q
    ||||||    
T  900343 accaat 900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 39534128 - 39534248
Alignment:
Q  103 ccgggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaa 201  Q
    |||||||  |||||| || ||||||| |||||||| |||||||||||||||||||||||||   || | || ||||||||||||||||||||||||||||    
T  39534128 ccgggcatgggttaaagaatctataattagaattt-ctgtcttgaaaatataaactgtcaccctttatcaagtaataattacattactttttaataaaaa 39534226  T
Q  202 cttatttcatttggtgcttaac 223  Q
     |||  ||||||||||||||||    
T  39534227 tttacctcatttggtgcttaac 39534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 41675663 - 41675785
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaact 203  Q
    |||||||| ||||||| |||| ||||||||||| |||| ||||||||||||||| ||| || || | || ||||||||| ||| |||||||||||||| |    
T  41675663 gggcaccgattaaggaatctacaaatagaattt-ctgttttgaaaatataaactatcattttttatcaagtaataattatatttctttttaataaaaatt 41675761  T
Q  204 tatttcatttggtgcttaaccaat 227  Q
    || ||| |||||||||||||||||    
T  41675762 tacttcttttggtgcttaaccaat 41675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 37919499 - 37919398
Alignment:
Q  127 aaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgcttaacca 225  Q
    ||||| |||||| ||| ||||||||||||||||||| || || | || |||||||||||||||||||||||||||| ||| || ||| ||||||||||||    
T  37919499 aaataaaattttttgttttgaaaatataaactgtcattttttattaagtaataattacattactttttaataaaaatttactttattcggtgcttaacca 37919400  T
Q  226 at 227  Q
    ||    
T  37919399 at 37919398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 29795619 - 29795508
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||||| || | |||||||||||| | |||| ||| ||||||||||||||| || | || |||||||||||||||||||||| ||||||||| |||     
T  29795619 ggttaaggaatccaaaaatagaatttt-tatcttaaaactataaactgtcactttttatcaattaataattacattactttttaacaaaaacttaattct 29795521  T
Q  211 tttggtgcttaac 223  Q
    |||||||||||||    
T  29795520 tttggtgcttaac 29795508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 20821994 - 20821911
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaactta 205  Q
    |||||| |||||||| | |||||| |||||||||| |||||||| || | || ||||||||||||||||||||||||||||||||    
T  20821994 tctatagatagaattgt-tgtcttaaaaatataaattgtcactttttattaagtaataattacattactttttaataaaaactta 20821911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 30924947 - 30924834
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||||| || | |||||||||||| |||| || || ||||| | ||||||| |  | || |||||||||||||||||| ||| ||||||||| |||     
T  30924947 ggttaaggaatccaaaaatagaattttttgtcatggaactataatccgtcacttttcatcaagtaataattacattactttctaacaaaaacttacttct 30924848  T
Q  211 tttggtgcttaacc 224  Q
    ||||||||||||||    
T  30924847 tttggtgcttaacc 30924834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 38362265 - 38362318
Alignment:
Q  174 taataattacattactttttaataaaaacttatttcatttggtgcttaaccaat 227  Q
    ||||||||||||| |||||||||||||| ||| || ||||| ||||||||||||    
T  38362265 taataattacattgctttttaataaaaatttactttatttgatgcttaaccaat 38362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 14110626 - 14110701
Alignment:
Q  125 ataaatagaattttctgtcttgaaaatataaactgtcacttctttgaaataataattacattactttttaataaaaa 201  Q
    ||||||| |||||| ||||||  |||||||||| ||||||| ||  || |||||||||||| |||||||||||||||    
T  14110626 ataaatataatttt-tgtcttagaaatataaaccgtcactttttataagtaataattacataactttttaataaaaa 14110701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 16839 - 16945
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| || | || ||||||||| || | ||||||||||||||||||||| ||||||||||    
T  16839 tctataaatagagttt-ctgtcttgaaaatataaactgtcactttttatcaagtaataattatataattttttaataaaaacttatttcttttggtgctt 16937  T
Q  221 aaccaata 228  Q
    ||||||||    
T  16938 aaccaata 16945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 861 - 1000
Alignment:
Q  113 gttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcat 211  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| ||| || || | |||||||||||||||||| || ||||||||| ||| || ||    
T  861 gttaaggaatctataaatagaattttctgtcttggaaatataaactatcattttttattaaataataattacattacattctaataaaaatttactttat 960  T
Q  212 ttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    || ||| ||||||||  || ||||  |||| |||||||||    
T  961 ttagtgtttaaccaaatccccagaaacactggttaacatt 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 22425 - 22543
Alignment:
Q  114 ttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatt 212  Q
    ||||||| |||||||||| || ||| ||| ||| |||||||||| ||||||| || | ||||||||||||||||||| ||||||||||||||| ||| ||    
T  22425 ttaaggaatctataaatataacttt-tgtgttggaaatataaaccgtcactttttatcaaataataattacattactctttaataaaaacttacttcttt 22523  T
Q  213 tggtgcttaaccaatacctc 232  Q
    ||||||||||||||| ||||    
T  22524 tggtgcttaaccaatgcctc 22543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 38905 - 38800
Alignment:
Q  122 tctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttcatttggtgctt 220  Q
    ||||||||||||||||  | ||||| ||||||||||||||| || || | || ||||||||||||||||||||||||||||||||||| ||||| | |||    
T  38905 tctataaatagaattta-tatcttggaaatataaactgtcattttttatcaagtaataattacattactttttaataaaaacttattttatttgattctt 38807  T
Q  221 aaccaat 227  Q
    |||||||    
T  38806 aaccaat 38800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 21809805 - 21809920
Alignment:
Q  112 ggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaataaaaacttatttca 210  Q
    ||||||| | ||||||||||||||| | ||||||  ||||||||| |||||||| || | || |||||||||| |||||||||||||||||||||||| |    
T  21809805 ggttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttatcaagtaataattacgttactttttaataaaaacttatttta 21809903  T
Q  211 tttggtgcttaaccaat 227  Q
    ||| | |||||||||||    
T  21809904 tttagcgcttaaccaat 21809920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 17506386 - 17506239
Alignment:
Q  106 ggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctt-tgaaataataattacattactttttaata--aaaac 202  Q
    ||||| ||||||| | |||||||||| |||||  | | ||| |||||||||||||||||| || | || ||||||||||||||||||||||||  ||||     
T  17506386 ggcactggttaagaaatctataaatataattta-tattttggaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaaaaa 17506288  T
Q  203 ttatttcatttggtgcttaaccaatacctcagaggcactagttaacatt 251  Q
    ||| ||| |||||||| |||||||| ||  ||||||||  |||||||||    
T  17506287 ttacttcttttggtgcctaaccaatgcccgagaggcaccggttaacatt 17506239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 4803275 - 4803157
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttg--aaataataattacattactttttaataaaaactt 204  Q
    |||||| |||| || |||||||||||||||| |||| ||  ||||||||||||  |||| |||   || ||||||||||||||||||||| |||||| ||    
T  4803275 gcaccgattaaagaatctataaatagaattt-ctgtgtttgaaatataaactgctacttttttatcaagtaataattacattactttttagtaaaaattt 4803177  T
Q  205 atttcatttggtgcttaacc 224  Q
    | ||| ||||||||||||||    
T  4803176 acttcttttggtgcttaacc 4803157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 10253054 - 10252940
Alignment:
Q  139 ctgtcttgaaaatataaactgtcacttctttga---aataataattacattactttttaataaaaacttatttcatttggt-gcttaaccaatacctcag 234  Q
    |||||||||||||||||||||| | ||  ||||   | |||| ||||||| | |||||||||||| |||| ||| |||||| |||||||||||||||| |    
T  10253054 ctgtcttgaaaatataaactgttattt--ttgactaactaattattacatcattttttaataaaatcttacttcttttggttgcttaaccaatacctcgg 10252957  T
Q  235 aggcactagttaacatt 251  Q
    || |||  |||||||||    
T  10252956 agacaccggttaacatt 10252940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 10008245 - 10008191
Alignment:
Q  174 taataattacattactttttaataaaaacttatttcatttgg-tgcttaaccaat 227  Q
    |||||||||||  ||||||||||||||||||| ||| ||||| ||||||||||||    
T  10008245 taataattacaccactttttaataaaaacttacttcttttggttgcttaaccaat 10008191  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 19418647 - 19418569
Alignment:
Q  174 taataattacattactttttaataaaaacttatttcatttgg-tgcttaaccaatacctcagaggcactagttaacatt 251  Q
    |||| ||||||| |||||||||||||| |||| ||| ||||| ||||||||||||||| |  |  ||||||||||||||    
T  19418647 taattattacatcactttttaataaaatcttacttcttttggatgcttaaccaataccccgaaaacactagttaacatt 19418569  T

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Target: scaffold0068 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 52131 - 52010
Alignment:
Q  107 gcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcacttctttg-aaataataattacattactttttaataaaaactta 205  Q
    |||| ||||||| | ||||||||||||||| | ||||||  ||||||||| ||||| || ||   |||||||||||||||||||||||||||||||||||    
T  52131 gcacgggttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcattttttaccaaataataattacattactttttaataaaaactta 52033  T
Q  206 tttcatttggtgcttaaccaata 228  Q
     || |||| | | ||||||||||    
T  52032 ctttatttagcgtttaaccaata 52010  T

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Target: scaffold1372 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 1263 - 1322
Alignment:
Q  105 gggcaccggttaaggactctataaatagaattttctgtcttgaaaatataaactgtcactt 165  Q
    |||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  1263 gggcacgggttaaggaatctataaatagaattt-ctgtcttggaaatataaactgtcactt 1322  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 202199 - 202163
Alignment:
Q  192 ttaataaaaacttatttcatttggtgcttaaccaata 228  Q
    |||||||||| ||||||||||||||||||||||||||    
T  202199 ttaataaaaatttatttcatttggtgcttaaccaata 202163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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