View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_high_11 (Length: 447)
Name: NF18323_high_11
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_11 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 171 - 447
Target Start/End: Complemental strand, 41530403 - 41530128
Alignment:
| Q |
171 |
gtgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggac |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41530403 |
gtgtaataacccgcatgtaaaaattcagtatcaattattttatcattggaaaatttaagagaaggacaaaatggtaactgttcacaaaacttttcaggac |
41530304 |
T |
|
| Q |
271 |
tgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaa |
370 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41530303 |
cgaatcatattattccaacggactattgagaatggaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaa |
41530204 |
T |
|
| Q |
371 |
gggcaaattggtcatttacataaaaacgtacaaatagaataaaactnnnnnnntttccacattcttctacactcttc |
447 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41530203 |
gggcaaattggtcatttacataaaaaggtacaaatagaataaaact-aaaaaatttccacattcttctacactcttc |
41530128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 183 - 416
Target Start/End: Original strand, 37366664 - 37366897
Alignment:
| Q |
183 |
gcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggactgaataatatta |
282 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
37366664 |
gcatgtaagaattcagtatcagttattttatcattggaaaatttaagagaaagacaaaatggtaattgttcacaaaacttttcaggatcgaatcatatta |
37366763 |
T |
|
| Q |
283 |
ttccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaagggcaaattggt |
382 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37366764 |
ttccaacggactattgagaatggaattttccgcttagaacttttacgacatttaatcggatattttagtttgaagaatagcatgaaaagggcaaattggg |
37366863 |
T |
|
| Q |
383 |
catttacataaaaacgtacaaatagaataaaact |
416 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |
|
|
| T |
37366864 |
catttacataaaaaggtacaaatagaacaaaact |
37366897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 23880088 - 23880260
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggact |
271 |
Q |
| |
|
||||||| || |||| |||||||| ||||||| ||||| |||| |||||| |||||||||| | || |||||||||| | || || |||||| || || |
|
|
| T |
23880088 |
tgtaataccctgcatataaaaattaagtatcagttattatatccttggaatttttaagagaaaggcataatggtaattttgcataagacttttaagaacc |
23880187 |
T |
|
| Q |
272 |
gaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggata |
344 |
Q |
| |
|
| || |||||||| |||||||||| ||||||||| | ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
23880188 |
gtatcatattatttcaacggactacgaggaatgaaatatctcgcttaaaacttttacggcattttatcagata |
23880260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 172 - 447
Target Start/End: Complemental strand, 5559767 - 5559493
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5559767 |
tgtaataacccgcatgtaaaaattcagtatcagttattttatcattggaaaatttaagagaaggacaaaatggtaactgttcacaaaacttttcaggacc |
5559668 |
T |
|
| Q |
272 |
gaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaag |
371 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5559667 |
gaatcatattatttcaacggactattgagaatggaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaag |
5559568 |
T |
|
| Q |
372 |
ggcaaattggtcatttacataaaaacgtacaaatagaataaaactnnnnnnntttccacattcttctacactcttc |
447 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5559567 |
ggcaaattggtcatttacataaaaaggtacaaatagaataaaact-aaaaaatttccacattcttctacactcttc |
5559493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 172 - 447
Target Start/End: Original strand, 19357427 - 19357703
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19357427 |
tgtaataacccgcatgtaaaaattcagtatcagttattttatcattggaaaatttaagagaaggacaaaatggtaactgttcacaaaacttttcaggacc |
19357526 |
T |
|
| Q |
272 |
gaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaag |
371 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
19357527 |
gaatcatattattccaacggactattgagaatggaatttgccgcttaaaacttttacgacatttaattggatattttagtttgaagaatagtatgcaaag |
19357626 |
T |
|
| Q |
372 |
ggcaaattggtcatttacataaaaacgtacaaatagaataaaact-nnnnnnntttccacattcttctacactcttc |
447 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19357627 |
ggcaaattggtcatttacataaaaaggtacaaatagaataaaactaaaaaaaatttccacattcttctacactcttc |
19357703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 387
Target Start/End: Original strand, 14529019 - 14529231
Alignment:
| Q |
171 |
gtgtaataacccgcatgtaaaaa-ttcagtatcatttattttatcattggaaaattta---agagaaggacaaaatggtaattgttcacaaaacttttca |
266 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||| |||||||||| |||||| ||| || ||||||||||||||||||||| || || |||||||| |
|
|
| T |
14529019 |
gtgtaataccccgcatgtaaaaaattcaatatcagttattttatctttggaatttttttttagggaaggacaaaatggtaattgtgcataagacttttca |
14529118 |
T |
|
| Q |
267 |
ggactgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtat- |
365 |
Q |
| |
|
|||||||| ||| |||||||| | ||||||||| | | |||||||||||||||| |||| |||||||||| |||||||||||| ||| | |
|
|
| T |
14529119 |
ggactgaaacata---------cggactatggggaatgaaatatttcacttaaaacttttacgatattttatcggatattctagtttgaagaagagtgta |
14529209 |
T |
|
| Q |
366 |
gaaaagggcaaattggtcattt |
387 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
14529210 |
gaaaagggcattttggtcattt |
14529231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 885101 - 885007
Alignment:
| Q |
228 |
agagaaggacaaaatggtaattgttcacaaaacttttcaggactgaataatattattccaacggactattgagaatgaaatttgccgcttaaaac |
322 |
Q |
| |
|
|||||||| || |||||||||||| || || ||||||||| | ||| ||||||||||||||||| | | ||||||||| | ||||||||||| |
|
|
| T |
885101 |
agagaagggcataatggtaattgtgcataacacttttcagaatagaactatattattccaacggaccacagggaatgaaatatcccgcttaaaac |
885007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 172 - 416
Target Start/End: Original strand, 2694205 - 2694449
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggact |
271 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694205 |
tgtaataccccgcatgtaaaaattcagcatcagttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggacc |
2694304 |
T |
|
| Q |
272 |
gaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaag |
371 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694305 |
gaatcatattattccaacagactattgagaatggaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtatgaaaag |
2694404 |
T |
|
| Q |
372 |
ggcaaattggtcatttacataaaaacgtacaaatagaataaaact |
416 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| |||||| |
|
|
| T |
2694405 |
ggcaaattggtcatttgcataaaaaggtacaaatagaacaaaact |
2694449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 172 - 375
Target Start/End: Complemental strand, 19804411 - 19804205
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaattta--agagaaggacaaaatggtaattgttcacaaaacttttcagga |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| |||||| ||| || || ||||||||||||||||| || || ||||||||||| |
|
|
| T |
19804411 |
tgtaataccccgcatgtaaaaattcagtatcagttattttatctttggaattttttttagggacagacaaaatggtaattgtgcataagacttttcagga |
19804312 |
T |
|
| Q |
270 |
ctgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtat-gaa |
368 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||||||| | | |||||||||||||||||| |||| |||||||||| |||||||||||| ||| | ||| |
|
|
| T |
19804311 |
ctgaaacatattatttcaacggactatggggaatgaagtatttcgcttaaaacttttacgatattttatcggatattctagtttgaagaagagtgtagaa |
19804212 |
T |
|
| Q |
369 |
aagggca |
375 |
Q |
| |
|
||||||| |
|
|
| T |
19804211 |
aagggca |
19804205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 3076923 - 3077004
Alignment:
| Q |
185 |
atgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttca |
266 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| || || || ||||||||| ||||||||||||||| || || |||||||| |
|
|
| T |
3076923 |
atgtaaaaattcaatatcagttattctatctttaaaattttcaagagaagggcaaaatggtaattgtgcataagacttttca |
3077004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 170 - 359
Target Start/End: Complemental strand, 1508022 - 1507833
Alignment:
| Q |
170 |
ggtgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaattta-agagaaggacaaaatggtaattgttcacaaaacttttcagg |
268 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||||||| |||||| ||| || |||||||||| |||||||||| || || ||||||| || |
|
|
| T |
1508022 |
ggtgtaataccccgcatgtaaaaattcagtataagttattttatctttggaatttttttagggaaggacaaa-tggtaattgtgcataagacttttcggg |
1507924 |
T |
|
| Q |
269 |
actgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaa |
359 |
Q |
| |
|
|||||| |||||||| |||| |||||| | |||| |||| | |||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1507923 |
actgaaacatattatttcaacagactatggggaataaaatatttcgcttaaaacttttacgatattttatcggatattttagtttgaagaa |
1507833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 356
Target Start/End: Complemental strand, 4222492 - 4222311
Alignment:
| Q |
174 |
taataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggactga |
273 |
Q |
| |
|
||||| |||||||||||||||| ||||| | |||||||||| |||||| ||| || |||||||||| |||||||||| | || ||||||| ||||||| |
|
|
| T |
4222492 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaattttttagggaaggacaaa-tggtaattgtgaataagacttttcgggactga |
4222394 |
T |
|
| Q |
274 |
ataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaa |
356 |
Q |
| |
|
| |||||||| |||| |||||| || |||||||| | |||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4222393 |
aacatattatttcaacagactatggaaaatgaaatatttcgcttaaaacttttacgatattttatcggatattttagtttgaa |
4222311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 359
Target Start/End: Complemental strand, 13714871 - 13714702
Alignment:
| Q |
189 |
aaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggactgaataatattattccaa |
288 |
Q |
| |
|
||||||||||||| | |||||||||| ||| || ||| |||||||||| |||||||||| || || ||||||| |||||||| |||||||| ||| |
|
|
| T |
13714871 |
aaaaattcagtataagttattttatctttgaaatttttttaggaaggacaaa-tggtaattgtgcataagacttttcgggactgaaacatattatttcaa |
13714773 |
T |
|
| Q |
289 |
cggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaa |
359 |
Q |
| |
|
| |||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
13714772 |
cagactatggagaatgaaatatttcgcttaaaacttttacgatattttatcggatattttagtttgaagaa |
13714702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 172 - 356
Target Start/End: Original strand, 5573507 - 5573692
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaattta-agagaaggacaaaatggtaattgttcacaaaacttttcaggac |
270 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||| |||||||||| || ||| ||| || ||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5573507 |
tgtaataccccgcatgtaaaagttcaatatcagttattttatcttttgaatttttttagggaaggacaaaatggtaattgtgcacaagacttttcaggat |
5573606 |
T |
|
| Q |
271 |
tgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaa |
356 |
Q |
| |
|
|||| |||||||| ||||||||||| | || |||||| | | |||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
5573607 |
tgaaacatattatttcaacggactatggtgattgaaatatttcatttaaaacttttacggtattttatcggatattctagtttgaa |
5573692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 375
Target Start/End: Original strand, 12287 - 12493
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaa--gagaaggacaaaatggtaattgttcacaaaacttttcagga |
269 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||||||||| |||||| ||| | || |||||||||||||||||| || || ||||||||||| |
|
|
| T |
12287 |
tgtaataccccgtatgtaaaaattcagtatcagttattttatctttggaatttttttttgggacggacaaaatggtaattgtgcataagacttttcagga |
12386 |
T |
|
| Q |
270 |
ctgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtat-gaa |
368 |
Q |
| |
|
||||| |||||||| ||||||| ||| | ||||||| | | |||||||||||||||||| |||| |||||||||| |||||||||||| ||| | ||| |
|
|
| T |
12387 |
ctgaaacatattatttcaacggattatggggaatgaagtatttcgcttaaaacttttacgatattttatcggatattctagtttgaagaagagtgtagaa |
12486 |
T |
|
| Q |
369 |
aagggca |
375 |
Q |
| |
|
||||||| |
|
|
| T |
12487 |
aagggca |
12493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 356
Target Start/End: Complemental strand, 28146897 - 28146709
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaattta----agagaaggacaaaatggtaattgttcacaaaacttttcag |
267 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| | ||| || ||| || ||||||||||||||||||||| || || ||||||||| |
|
|
| T |
28146897 |
tgtaatatcccgcatgtaaaaattcagtatcagttattttaactttgaaatctttttttcagggaaggacaaaatggtaattgtgcataagacttttcag |
28146798 |
T |
|
| Q |
268 |
gactgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaa |
356 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||||||||| | ||||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
28146797 |
gactgaaacatattatttcaacggactatggggaatgaaatattttgcttaaaacttttacgatattttatcggatattctagtttgaa |
28146709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 375
Target Start/End: Original strand, 5129261 - 5129398
Alignment:
| Q |
239 |
aaatggtaattgttcacaaaacttttcaggactgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaat |
338 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||| |||||||| |||| |||||| | ||||||||| | ||||||||| ||||| || |||| || |
|
|
| T |
5129261 |
aaatggtaattgtgtataaaacttttcgggactgaaacatattatttcaacagactatggggaatgaaatatttcgcttaaaatttttatgatattttat |
5129360 |
T |
|
| Q |
339 |
cggatattttagtttgaagaatagtat-gaaaagggca |
375 |
Q |
| |
|
|||||||||| |||||||||| ||| | |||||||||| |
|
|
| T |
5129361 |
cggatattttggtttgaagaagagtgtagaaaagggca |
5129398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 5248150 - 5248257
Alignment:
| Q |
188 |
taaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggactgaataatattattcca |
287 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||| |||| || |||||||||||| || || ||| | |||||| ||| ||||||||| | |
|
|
| T |
5248150 |
taaaaattcagtatcagttattcaatcattggaatttttaagaaaagggcataatggtaattgtgcataagactgtgcaggaccaaatcatattattcga |
5248249 |
T |
|
| Q |
288 |
acggacta |
295 |
Q |
| |
|
|||||||| |
|
|
| T |
5248250 |
acggacta |
5248257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 26618762 - 26618825
Alignment:
| Q |
313 |
cgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtat-gaaaagggca |
375 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
26618762 |
cgcttaaaatatttacgatattttatcggatattttagtttgaagaagagtgtagaaaagggca |
26618825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 26724673 - 26724736
Alignment:
| Q |
313 |
cgcttaaaacttttacgacatttaatcggatattttagtttgaagaatagtat-gaaaagggca |
375 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
26724673 |
cgcttaaaatatttacgatattttatcggatattttagtttgaagaagagtgtagaaaagggca |
26724736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 5248265 - 5248311
Alignment:
| Q |
313 |
cgcttaaaacttttacgacatttaatcggatattttagtttgaagaa |
359 |
Q |
| |
|
||| |||| |||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
5248265 |
cgcataaatcttttacgacattttaccggatattttagtttgaagaa |
5248311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 359
Target Start/End: Complemental strand, 22212507 - 22212318
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaa---aatttaagagaaggacaaaatggtaattgttcacaaaacttttcagg |
268 |
Q |
| |
|
||||||| ||| |||||||||||| ||||| | || ||||||| |||||| |||||||||||| |||||| |||||| || || |||||||||| |
|
|
| T |
22212507 |
tgtaataccccacatgtaaaaatttagtataagttcttttatctttggaattttttttaagagaagggtaaaatgaaaattgtgcataagacttttcagg |
22212408 |
T |
|
| Q |
269 |
actgaataatattattccaacggactattgagaatgaaatttgccgcttaaaacttttacgacatttaatcggatattttagtttgaagaa |
359 |
Q |
| |
|
|| ||| ||||||||||||||||| | | ||||||||| | | || |||||| |||||| || || | |||||||||| ||||| |||| |
|
|
| T |
22212407 |
accgaaacatattattccaacggacaacggggaatgaaatatactgcgtaaaac-tttacggcactttaccggatattttcgtttggagaa |
22212318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 38863 - 38975
Alignment:
| Q |
172 |
tgtaataacccgcatgtaaaaattcagtatcatttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggact |
271 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||||||||| || ||| |||||||||||| |||| ||| |||| ||| || | ||||| |||| |
|
|
| T |
38863 |
tgtaatatcccgcatgtaaagattcagtattagttattttatctttaaaaattttaagagaagggtaaaaaggtgattgctcataagaattttccggacc |
38962 |
T |
|
| Q |
272 |
gaataatattatt |
284 |
Q |
| |
|
||| |||||||| |
|
|
| T |
38963 |
aaatcatattatt |
38975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University